nup88 (nup88,LOC107709758,LOC107664301,LOC107600765)


Basic Information

Item Value
gene id nup88
gene name nup88,LOC107709758,LOC107664301,LOC107600765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14748438 ~ 14756063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921486.2
TCGCCCTGCGacgacacacatacacacaaggaAAAATGGCGACGCTGGCCGCGGACCGTTGGAGGGATGAGCTGCCTGGCCACGAAATATTCTGTAAACTACAAGAGAGCCGGATTTTGGAGCCACAGGGAACGAGCAGAAGGATAGTTAAAAACCTTACGTTTTGCCTGAATGGAGATTTGTTTGTGTGGGATAATGTAAAGAGCGTGTTTTATACAACAAACCTACGGCTGCTCAACTCTGAGCTTACTTCCCACACGGCGAAATACCAGACTTTGATGTGCATCAACCCACCACTATTTGAAGTGTGTCAGGTTCTGCTCAGTCCCACTCAGTATCATGTGGCTCTCATTGGTCAGCGTGGGGCAACAGTGCTGGAGTTACCCCAACGCTGGGGCAAGAAGTCAGAATTCGAAGGTGGACGCCTCGAGATCAACTGCAAGACGATTCCTGTGGCTGAGCGCTTCTTCACCAGCTCGACCTCCGTGACCCTGCGCCAAGCTGCTTGGTACCCCAGCGAGACGGAGGAGCCCCACCTAGTACTGCTCACCTCAGACAACACCATCAGGTTCTACAGTCTTAAGGAGCCCCAGACTCCAGCGCGAGTGCTTCCAGTGTCTCAGTCTGACGAGGAGAGCACCATCCACCCAAGAGGGCGCTCCTATGCAGCCTCTCTAGGCGAGATCGCGGTGGCGTTTGACTTTGGGCCGTTAGTCGACGCCCCTCGCCACCTCACCGGCACGCGGCTGAAGGAAGACCTGCTGGTTTACCCGTTATACATCCTCTACGGGAACGGAGAAACATTTCTGAGTTACACGTCTCTCACCTACGTtaatctgGGGAAGCTCCTGGGTCCTCTACCCATGTACCCTGCCGCGGAGGATAACTACGGCTACGACGCCTGCGCCGTGCTCTGTCTACCCTGCGTGCCCAACATCCTGGTGATCGCCACTGAAGCAGGAATCCTCTATCACTGCGTCGTGTTAGAggcagaggaggaagaggatggtGGAGCTGTGGAGAGGTGGTCCCGAGGATCAGAGACAGTGCCATCGCTCTATGTATTCGAGTGCGTAGAGCTGGAGCTCACTCTCAAACTGGCCGCTGGGGAAGAAGAGGACCCAACAGATTCGGACTTCACCTGCCCGATCCGATTACACGGAGaccCCCTGTGTCAGCACAGGTACCACTGTACACACGAGGCAGGCGTTCACAGTGTAGGACTCGCGTGGTTCAACAAACTCCACAAGTTCCTCCAGTCAGatGAGGAGGATAAGGACAGCCTGCAGGAACTGGCAGCTGAGCAGCGCTGCATAGTCGAGCACATCCTCTGCACCAAACCCCTCACAAGCAGtttaccAGCTCCTGTTCGTGGATTCTGGATCGTGTCCGATCTGTCTCTGGGTGCCACAATGATCTGCATCACCAGCTCTTACGAGTGTCTCCTGCTTCCTTTGCTTAGTTCTATACgtcctccctctcctcctctgttGTGTTCGCGGGTGGGAGTGGAGGAGGGGTCTGTAAGCTCCCCGCTGCGTGGACTGGCTCATGACTCGTTTGAGCAGCACATCAGGAACATACTGGCACGCAGCTCCACCAATCCGCTCATGCTCAGgtcagGGGATAAGGACTCCTCTACTCCCACTCCAGAGTGTCTGCAGCTACTGAGCAGAGCCACGCAGGTCTTTCGGGAGGAGTACATCCTCAAGCTGGACCTGGCCCGTGAGGAAATGCAGAAAAGGGTCAAACTGCTGACCAGCCAGAAGAACAAGCAGCTGGAGGACCTCACAATGTGCCGGGAGGAGAGAAAGAGCCTGAGGGAGGCAGCAGAGCGCCTGGCCGACAAGTACGAGGACGCTAAATATCGGCAGGAAGCCATTATGAACAGgaTGAAACATGTGCTGGGTAGCCTGCGCAGTCAGCTTCCAGTGCTGTCCGACAGCGAAAAGGACATGAAGAAAGAGCTGCAGACCATCAACGACCAGCTGCGACACCTCGGAAACAGCATCACACAGGTGAACATGAAGAAGGATTACCAGAAGAAGCAGATGGATAAAGGCTCGTCTTCAGCTCGAGCCACCATAACTCTAAATGCCCACCAGAGGAAGTGTGTTCAGGGCGTCTTAAAAGAACAGGGTGAACACATTGCTGACATGATGAAGCAGATCAAAGACATCAAGAACCATTTCAATTTCTGAAGAGCAGTAGTGAGAAGTAATCGCTGACCGCATACCACAAAGCACTATATTCAGCTCGCAGTGCCGAATTATCTTTGCAGCTTGTACAATGACTCTGAGGGTAAAAGATAAGCTCGACACGTTTGTATACAGTAGCTTTTATATGTTGTGTGTACAAGTGTAACAATCTGTTggaggaaataaaatgtttttgtacatttaa

Function

symbol description
nup88 Predicted to be a structural constituent of nuclear pore. Predicted to act upstream of or within mRNA transport; protein transport; and ribosomal subunit export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Is expressed in several structures, including brain; eye; immature eye; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in fetal akinesia deformation sequence syndrome 4. Orthologous to human NUP88 (nucleoporin 88).

NR:

description
nuclear pore complex protein Nup88

GO: NA

KEGG:

id description
K14318 NUP88; nuclear pore complex protein Nup88

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921486.2 True 2403 mRNA 0.53 17 14748438 14756063

Neighbor

gene id symbol gene type direction distance location
rad51d rad51d coding upstream 655083 14086642 ~ 14093355 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 859171 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 873529 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 937884 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 984353 13751910 ~ 13764085 (+)
mis12 mis12 coding downstream 36070 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 55039 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 102494 14858557 ~ 14860744 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding downstream 106295 14862358 ~ 14916498 (+)
drd2b drd2b,LOC108259734,LOC108428674,LOC107664308,LOC107745132,LOC107691748 coding downstream 341005 15097068 ~ 15138075 (+)
G387160 NA non-coding upstream 32383 14708856 ~ 14716055 (+)
LOC117596237 NA non-coding upstream 564387 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding upstream 573013 14170058 ~ 14175425 (+)
G386490 NA non-coding upstream 617811 14130171 ~ 14130627 (+)
G386458 NA non-coding upstream 672378 14073248 ~ 14076060 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding downstream 78856 14834919 ~ 14924865 (+)
G387197 NA non-coding downstream 100205 14856268 ~ 14868701 (+)
G387208 NA non-coding downstream 178641 14934704 ~ 14936042 (+)
LOC113531625 NA non-coding downstream 426250 15182313 ~ 15204882 (+)
G387383 NA non-coding downstream 449691 15205754 ~ 15207897 (+)
G386325 NA other upstream 920290 13825850 ~ 13828148 (+)
G386294 NA other upstream 924383 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1947521 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2913394 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 3422383 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 407321 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 488942 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 598297 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 605295 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1051486 15807549 ~ 15859905 (+)

Expression


Co-expression Network