gas1b (LOC108260269)


Basic Information

Item Value
gene id gas1b
gene name LOC108260269
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10132278 ~ 10135643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921547.2
AAGATTGTGAAAGCCTTGCAAGACAGACAGCCAATTTTTCTGCAGCTAGAAGAACTTTAGGGGAAAGCTCTGTCCCATCCCCCTACCAAAACCCCAAACCCCTTTGTCACGTTCTTGACCCCGCCCCCCAAATGACTCCGCAATCACAACAACGCAGCAGACCAATAGGAATCCGAGGCTGCGTCCAAAGCCGCATACTAACTTACTAACTAGTGAGTCAAAACTGAAGGTGGCGTACCATTTTGACATTCTATGTAGTAGGgcagtatgtggtttgggacgtagCCCAACATTCTCCTCTCACTCTGAGATATGAGGGAAACGAGGCGGGCTGCTGAGGAAGCACTGAGGCGACAGAAAGTAGGTTCCTGAAGTTTAGTGCATGGAAATGTTGCACAAACTGCTGTTAAACCCTGCAGGAAACTTCTGACTGACTCATAATCACCTCGGTTTCGATGCTATGGACTCCAGAGGTTTACAGCACGGACATTTTGACAGAAAGCCTAGCGGGTCTGTGGAGGTGGATGCTAAAAGGACACATGTGAACGCGTAGCCCTTGTGCACTTGGGCAGTGAGTTTCAGCTGAACACCAGTGGAGCTGCAGGACTAATTTCAGCTGTACAGACATGGACGTGTGCTGGCTGTCCAGCACTACACGGAAAACTCTGTACCAGGCTGCTGTAGAGCCCAGTGTCCAGTGAAGCTAAAGCAGGATTGGAGTAGTGATGGATGAGTCGCTGAGGAATCGGTTCTTTTTCGCGGCTTCACTGTGGACTCGCGACTGAACTGAAGGTTGGAGCGAAAAAATTtatcatggatttttttttttaaccacacaaAGTTTAGTTTGACTTGTTGAAATCCGACTGCCAGGTTATTAAAGTGGTTCCACACTGTATATAGCAGTAACCTGGCTTGGAAACTGTAAATATGCTTTTAGCTTTTAGCTAgactgttatcacttaaaaTGAAGGATATTCtcagctataaaataaaaagctgttaaatgaataaatacagacctgtgaatgtgtgttagGTCGAAATTGTTGAGATTTCGGAATGTGCCGCGATTCACGTAGAGTTTTGTCCTAAAGAGTCGAATCAGTAAAGTGACTCAGTGACTCAGTGAATCAGAATGCCCAGCAGTACCTGTGTGCACACGTCCATCCTCCCGGTGTGGATCTGGACTGCTGGTTTAACGCTGGTGTGTTTGGACGCTTTGGCCACTGCGTCCCCAGCTCACGGTCACCGTCTGATCTGCTGGCAGGCCATTATGAAATGCCAGTCAGAACCCGCGTGCCATTACGCGTACACGCAGTACACGCGCGCGTGCGGACCCGTCATTAACGGACACAAGAAGAAGTGCCCGAGCCACTGCATCTCATCCATCGTGCAGCTCAATCTGACCGACAACGGCCCAGGGCTGGAGCACTGCGAGTGCGCCACGGACACGGTGTGCGTAAACGCCAAGCGCCGCATTGAGCCGTGCATGCCGCGGATCAGCCGCACGGGCTGCACAGAAGCGCGGCGCGCGTGCGAGGGCGACGCGGACTGCAGCGCTGCCATGCGGGACTACCTGTTCCACTGCCGCGAGCTGTTCGGCGGAGAACGCTGCTCGGATCAGTGTCGGCGAGTTATCCAGCGCATGCGCACCGTGCCCAAGGCACGCCTGTTGGACACGTGCGAGTGCGATGGCGCTGAGAGGACCATCTGCGAGCACGTTAAGATCAGCATGATGAGCTTGTGCTCCGACGCGCCTGAGCCCCGCGACGCGGGCAGCGGCTTTTCAGACGACGAGGACGAGCTGGACAGTGACTATGCCACGGAGGATTATGAGGACGAGGACAGCGCGGGTGGAGTGTCCAGGGCGCACACAGGTTTGATAATGACCTCCACCTTTTTAGCCGTTACACTTCTTCAGTGAATGTAAAATTACAGCAAGGACTCACTGTGGGACAGATTGGCAGTATTTATTGCAGGGATGCACCAATGTCACTCTTCATTTCTGCTATAATATCAAAGCTCCAAAGATCATTCCATCCAGAACCTGGTACTGATCTGATACTGACTTCTGCACAGTTCCTGAAGTGACGCTCCACAAGCTTCTGCTGCACACTTGTCCCAGGAATGATGTGTCCTGTATGCACGTGCCATGTCGGGCAgcgtcacacacactcaccggaGAAAACAAGACAGtgagatttatatatatgtaaaagaAATGATGTCAAATGTGACACAATAGCAGTCGAGCACTTGAGGATAGTATCAGCCCAGCTACCAATACTCCAAATCATAACCATGTATCCATAATTGATCAGGTTTTTGGACTGGAAGCATGACCTTTGTTAAGCGCACGTCTTTACAGGTTTGTAGTGTAAATTGCTTGTACTCTACAGCTGCACAATATATTATTTGTGAGTTATTTGTTATTGCAGTATTGTCTGCTGTGATCATCCCAACCACAACCCGCATGCATACATGTGAACAGTAAAACTGTCAGCACAGGAAAACCCCTTTTAAATTGGAACTTAAAGCTCTATTCGCATTTATTCTTAGTTTATTTTCAATGCCTACATCAATTGATAATTGCTCACGCAACGATTAACAATGCCGTCATGCAGTCTCTGTAGTGTTTCAGACATTTCACATCCAGAATCTAGGAGTTCATTCTGATATCcttcatatattaaaaatgtctttccAAAACTCCAGATACATCCATAATGCCAATAAACAGCTATATAAGTAACGTGCAAAGAAATATCTTACATCTGCATATTAGTCCCTCATGGTCACGTGACCGAATATGCATGTTACAAACACCGGCAGCGTGACTGTTTGTAATACAGCGCTGGAACTGCTGGTGTTGGTTTCTGTCGGGGGTTGTGATGAATCACAGCATTCCTATTACTTGACAGACATTAAAATGTTGGTCACAGTGATGCAGATAAATCATTACCCCAGTCTATCACAGAATCACAATACATGGGTCAATCGAGTGCAGCCCTGTTTACagctttcttaaaaacaaatgataGACGAGTGAAATGCTAATAATCATGAAGCACCTGAATGTCTCTGTTAATACCACTTAGCACTGTGCCCCTTGATATTGATAGTTGAGGGCTGTGCATCACcagaaattaaattattctgaaaTGATAAAAGTTATTTCATGTAAGATGAAGTGGAAAGGGGAGTATTTTTGTTTCCCGGAGAGATCTATACACAAAAATAACGTGTGTGCTTTTCTATGATGTGCCAGTATTacaatgtacaaatatttttgaAGAATGAAATTAGAAGATGGAGTTTTGTGTTTCAAACCTGGGCATAAAGTGTTCTGAATGTGAAAAGTTT

Function

NR:

description
PREDICTED: growth arrest-specific protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921547.2 True 3366 mRNA 0.47 1 10132278 10135643

Neighbor

gene id symbol gene type direction distance location
fbxw2 fbxw2,LOC107723354 coding upstream 19123 10102353 ~ 10113155 (+)
ncs1a ncs1,ncs1a,ncs1b,LOC107693863 coding upstream 37471 10053793 ~ 10094807 (+)
gpr107 gpr107,LOC108427620 coding upstream 89304 10004996 ~ 10042974 (+)
ntmt1 ntmt1,LOC107693833,LOC107597156,LOC107587381,LOC107740971 coding upstream 144650 9980300 ~ 9987628 (+)
ptpa ptpa,LOC104951750,LOC107693860,LOC107587375,LOC102782294 coding upstream 370440 9743409 ~ 9761838 (+)
dab2 dab2,LOC108260308,LOC107723357,LOC107691042,LOC107597220 coding downstream 34478 10170121 ~ 10183321 (+)
hspb15 NA coding downstream 48445 10184088 ~ 10186161 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding downstream 76299 10211942 ~ 10223032 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding downstream 116944 10252587 ~ 10261745 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding downstream 137007 10272650 ~ 10284551 (+)
G384466 NA non-coding upstream 2747 10129243 ~ 10129531 (+)
G384461 NA non-coding upstream 4307 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 9392 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 296366 9835704 ~ 9835912 (+)
G384197 NA non-coding upstream 318587 9813485 ~ 9813691 (+)
G384583 NA non-coding downstream 171031 10306674 ~ 10306908 (+)
G384606 NA non-coding downstream 222016 10357659 ~ 10358263 (+)
G384607 NA non-coding downstream 222627 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 225612 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 244927 10380570 ~ 10388271 (+)
G384178 ier5l,LOC108228905 other upstream 364242 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1357144 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1539897 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1567021 8558826 ~ 8565257 (+)
G383217 NA other upstream 1919171 8182391 ~ 8213107 (+)
G384593 NA other downstream 242570 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1162331 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1582375 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2655258 12790901 ~ 12800917 (+)
G386294 NA other downstream 3686145 13821788 ~ 13824055 (+)

Expression


Co-expression Network