LOC113531112 (tspoap1)


Basic Information

Item Value
gene id LOC113531112
gene name tspoap1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6831684 ~ 6931919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921613.2
TTGAGGATTTTCAGGAGCCGGACGTTTGGCTTCAGCTGGAAGCAACTGGTGTTTTTGTGGATTCAGTCCGGGATTGTGCAacgaaaacaaaacacacaaacatgacacTGCTTCGTCGCTGTACGTCTTATCCGGGTTGTggcgcattgatataaacccTTAATCCGCGGGGAATAAGTGAAGGAGCTGCAGGACGTTGTGTCAGAGTGGCCATATGGAGTAGATTTTGCAATGCATGCTTGTGACCACCGATATCCTGCATAAATGCATTTCTTCACCATTGCATATCTTCAACATTCATCCTTCCCTAGTGCATGCCTCCAACCCTGGCCTGACCaggcctttttttctctctgtctcttcttcctccataaaaataatatcacaTCACTATGGGCAAGGATGAAGTTGACAGTAACCACCAATATCTCTTCTCCAAAAAAGCAATCCTGCAATCAAGGAGTTCTTCACTTTCGAAAAAGGAGTCCAAGAAAGTCTCGTCTTGCCACAACAGACTTCAGACCCCATCCCAACCTGTTCTTGGTCCTGGACGTCAGAAGGAAAAGGCCCTGGAGCTGCCCTGGACCGGGTTGGAGCACCAGCACCTTGACCACGCTAACCTCAAGCAGGCTGGTGAACTGCGCCAAAGGCTGGCCGATGAGATCGCTGGCACTGTAAGACCAGACAGGACAGCGAAAGCAGGCAAGAAGTGGACAGGAATTGATTCAGGGTGTAAAGGCAATGGGGCAACCTACCGTAAACTGGAGGAGCTGCTGAGGGCTCTCCATGGGGAAGCAGACAAAGAGCAGGCCGGGCTTCTGCAGTGCCTCTGGGAGGAAGTGGAGCTGGAGAAGAGCTACTTCCTGTGCCACTTGCTAGAAGTACATGGGCATCCTTCACTAGCAGTAGAAGAGAAAGAGGACAAAGTTACAAAAGGTCCAGCTAAGGCCCTTAGCTGGAGGTCAAAGATCTCTAGGAGCAAGGATATCCCAGAGTCCTTCAAGGAGAGAAAGCATTTCGTCAGCCATTACTACACAGATTCTTGGAAGTGTCCACCTATGAAAAAGAGCAAACAGGGGTTGGAAAGCTCATTTGAAAAGGAGAATACTGGGAAAAGCCCTCTCAGTTCTTCTCTAGTGGAAGAAAATACCAACAAGGGAGATCTTTATCAGACTTTACCTGATGTGGGTTGGGAACTCCAGAGTTCTGGACCATCTCTGGAAAAGTTGTCTCCCTCCAGATGTTCAGAAGACAACATGGAAGACACGAACGGCGCAGATTATGACTATCTAGTGCAGCAGAACTCGGAGCTGCTGAGAGCGCTGGAGGATCTGGAGAAGACCGTCTCCACGCTCCGAGAGGAGAACAGCCTCCTGCGTAAGAGCAGTTGTCCTGAGACGGAGGACAAGGTGAAGAGGCTGAGGAGGAAGAATGCAGAGTTGGCCGTCATCGCTAAGCGTCTGGAGGAGAGGGCACACAAACTGCAGGAGGCCAATCTTAAAGTGgtgaaTGCCCCCATCCCCATAAAGCCTGGTGCGATAGAGCAATATAAGAGAGCGTTTGCAAGGCAGCGGGCGCGAGACCTGGCGCAGCACGCAGACACACTCCTCTCCAAAGACAAGGAGATCGCCGCACTGCAGCAAGAGTGCCGACAGCTAGAGGCCAGAATAGGACAGGACAAAcagGGTGGTCCTGGTCCGGCAGGAGCAGGGGAGTTTGAGCGGTTGCTGAAGGAGTCTCAGAAAGAGGTGCTGCGTCTGCAGAGGCAGCTCTCAGTCAGCTCGGCTCGGGACCAGAGCTCAGCTGGAGGAGCCGAGAAAGAGCGAGAACAAAAAGAGGCACCCGTTGTACGTGAAACCCCACAGCCTGCAGTTGATGAAGTCCTTGTTAagggggaggaaacccatggAGAAGAGGAACAGTCTAGAGCACAAGTAACCTCAGAGCAGGACACCAGCTCCGCCCACCAGGAAGAACAGTCACAAAAGGACCGTATAGAGTTTCTGGAAAGTGAGTTGagcaagaagagaaaagaatgtGAGGGTCTCGAGCATGAAGTAAGGAAGAGGCAGAAGAGATGTCTCGATTTGGAGAGCCAGCTTGAGGATGAGCGCGGCAAAAATGAGCGCTTAACAGAGGAGGCCGAACTCCTCAGGAGGAAGGCTCAGCTGCTTGAGCAGTCTCAGGTTGAGAATGAGGAGCTGAAGGAGGAGCTCTCTGCGGTGAGCGCTCGGTATAGTTCAGTTCTCGAGGAGAACCAGAGACTCCGTGCCAAGCTGGAGAACCTAGAGCAGGTCCTAAAGcatatGCGAGAGGTCGCAGAGCGCAGGCAGCAGCTGGAACTGGAACATGAGCAGGCACTGGCTATCCTCAAGTTCAAACAGGATGAAATCAAACGACTTCAGCGGGCTCAGTTATTTGCTAAGAGGGAACATGAAGGAGTTGTGCAGATGCTGGAGGGGTTGATCCAGTTTGTATTGCTGAGAGAGCTGAACACATTGGACTGCATGCAGGCGAAGGTACGGGAGCTGGAGCAGAAGTGCCGTAATCAGAGCGAGCAGTTCAGCCTTCTCTCTCAGGAGCTGGACAAATTCCGGCAGCAGGCCTCTAAGATTGACCTGTCGGCTCCTGGACTGCTGTGCTCCGGCCTCACACAACTTCCCAACGGCCTCAGTCTGCCCACAGACCCCGGCACTAGTGCCTCATGGGATGACATCGCCTTCTGGAGTCTGGAGGGTAACGAGGCCCTCTGTGACGTCTCTGAGCAGGATTTGTCTGCTGTGCTTCGGGCCGGCTCGGCACCATACACGGGAGGTCTGTCCCAGCCTGAGCGCTCGCCGGGCACCAAACACCGCGAGCTGCCCAGCCTGAACCCGAAATCAACCTCCACTTCTTCCAGCACTTCTCCACCCaaatctgaaaacacacacctgtcgCCAAAATCAGCCGCAAACTCGCGCAAAGCCAGCCCCACTCACGAGgTGGACACTGCCAGTGAAGTTGAGGAGCTGGACATCGACGTGTCCCCTGTTCCCTTCCCAGCCAGTCGAGGAGCTGCTAAACTCCAGGTTTTTATTGCCCGTTACAGCTACAACCCATATGATGGCCCAAATGATAATCCAGAGGTGGAGCTGCCTCTCACGGCAGGGGAATACATCTATGTATACGGAGACATGGACGATGATGGCTTCTATGAAGGTGAATTGATGGACGGCCGTCGAGGCCTGGTCCCATCCAACTTTGTGGAACGTGTCTCAGATGATGAGGCACATGAAGCCGCTGACTTTTCCCACAACTCCTTCCTGGAAAGCAGTTTTCACAGCACCTCAGAGAGACCACATCAGCACCAGCACCATGTGCGCTTAGCCACAAGCAACACAGACAAGACAGAGACCTCGGCTACCAGTGACATAAGCAAAGCCGGCACTGTGCCACTCGTGAATGGCTTGGAATTGGATCTGGACTTGGAGGATGACATAGAGGCTCACATTGTGCCTCATCCTCACAAGTTGACTCTCATCAAACAGCTAGCTAAGAGCATAGTGTTAGGCTGGGAGGCACCCCCGGGAGGAGTCACAGTGCGGAGCTACAACGTCTACGTGGACCAGGAACTGCGTCTCAGTGTGCCCACGGGAAACCCGACCAAGGCCGTGTTAGAGCGAATGGATACGAGCCATAAGGCTCACCGTGTGGCTGTGCAGAGTGTGACGGAGCGTGGTACCTCAGACCCATTGCGCTGCTGCATGCTGGTAGGGAAGGACGTGAGCGCAGCACCCACTGAGCTGCGGGTAGAACGCATCATGGCCACTTCAGCCCGTCTTACTTGGCTGCCTAGCAACAGCAGTTACGCACATGCAGTCTCTTTGAATGGTGAGCTGCGCGAGTTGGTGCAGGCCGGCAGGTACTCACTGCGCCTTGGTGACCTTATGCCTGGTCTGCACTACCGTGTGGAGGTGGAGGCACAGCTGCCATCGGAGCGGAGGGAGCGCAAGTGTGCTGTCACCTCCTTCACCACACTTACTGCAGGTCCTCCTGATGCTCCTCTGGATGTGCAGCTAGAACAGGGGCCAACCCCAGGGATCGCTCAAATCAGCTGGCTCCCTGTGACTATTGATGCTGCTGGGACTTCCAACGGGGTCCGTGTCACAGGCTACACCATCTATGCTGACAAGAAGAAgGTGTTGGAGGTGTCCTCGCCCACAGCGGGCAgtgctctgattggtccttCTCAGATTGAAATGCTTCAAGCGGCCCGCGAGCTCACTGTGCGCACCATGTCTCCTCATGGTGAGTCAGCCGACTCGACGCCCGTGAATGTGCCTGCCAAGCTACCTGCCATCATGGCGGGTGCCTCCATGCCTCCCTGCCAGCCTGTGCCAGCCCACGCCAGTGTCCTAACCGCCGGTGCCACCAACAAGGAGCCCAGTGGCCGTGCCACCTCTCTGTCTGCTGCCAAAACGTCCACGATGCCACTCAGCTCTATACTAGATTCAAATCCTCCTTCTCCCATCAGGGATGTCTATGCCAACACACCCAAAGCTGCCACCAATGATGCCCCTCTGCCCACTGCCTCATATGTAGAGGCATGGGCAAATCCAGCTGTGGCTGCGCAGGAGGCACGACCACTTCCTGGTGCCAATGCCAACCTGCAGGAAACACTATCTGTACCAAAAGTTGTGCCCACTCCTGTGCCGGTCCCAGTGGCCATGCCCACAGCCAGTGCCCTGGCATCTCCAGCACAGCCCAGCATAGCCCTTACAACAGCGCTGGAGCCTAGCAGAGAGACCGAGAGCCCAGGGCCACAACGTTCCATTACTTCTGTCTCTGATTTCCTGGATGACCCCATGCCACATAAGTCATCACCCATGCCCAGTATGCCCAGAGTCAGGGTCCCTGGGACAGATCTGCTTGACGTGCCCGATACACATCCCCTGCGGCCACCGATCCCCTCACCTGTAGAGTCAGAGCCGGAGGGTGACGGGGAGAGCACTCGTTTGGTATCCATCGAAGAGTTCCTGCGGCCTGAACCTGTGCCAAGAACAAAGGTATATGCAGGAGGTCTGATGGACCCTCCTCCTGACTATCATGTGGAGAGCAGCCGTTCAGACCTATCCGATAtcctggaggaggaggaagaagatcTGTACTCCGAGTCTGCCGCTGATGTAACTCCCAAGAATTACAACTCTGGACCTGCAGGCAGGGAGACTGCAGGTCTAGCGGACTCAGGAACAGCCTGGTGTGGCCCCAGAGACATCTCTCCAAAATTAAATCGATCAGAGACCAGATTGCCTAGAGatgTTGCAGAGCCAAGGCCAATTGGTGACAGTGAAGTACGGATTTTCGTTGCCCTCTTCCCATACGATCCTTCAACAATGTCACCCAATCGCGATGCAGCAGAGGAGGAGCTTCCCTTCAGGGAGGGACAGATCATTAAGGTCTACGGTGATAAGGACGCAGATGGGTTTTACCGAGGCGAGTCAGGTGGCCGTCATGGTTATGTGCCCTGTAACATGGTCTCTGAGATTCAGGTGGATGACGATGAGACCAGAGATCAGCTGCTACAGCAGGGCTTCCTGTCCACTGAGACTTCTATAGAGAAGATGGGCGCACGCTCACTCGCTCAGCTTCCGCACCGTCCGGCTCCACCACCCAAACCTAGACGCTCCAAGAAAGtGGAATCTACGGGAGTTTTGGAGGACAGTTCCAACACTGAGTCCTCCAACCAAGATAAGGCACGACACTCAGCCATTGCCATGGGAAACCCTGTACCTCGCAGGATGGTGGCCATCTTTGATTACGACCCAAGAGAAAGCTCCCCTAATGCTGACATTGAGGCTGAACTGACTTTTAATGCTGGGGACATCATTTATGTGTTTGGAGACATGGATGACGATGGCTTCTTTTATGGGGATTTAAATGGACAGAAAGGGCTGGTACCTTCCAACTTCCTTCAGGGTTTTCCAGAGAATGGAGATGAGTCAGCAGAAGCCGAACATACTATAGCCAACAGCCGGAGAGACTCACagGTGAGCCATGCTGCGTCTGTAGAACAGACGGAGCCCCTAACGTCAAGTCCCCCAGACGAAACCCGGACTGAACCCAATTCTCAACCTGATTCACACCAGAACCTCCTTCCAGACCAGCAGCCTGAACACCACCCGGGTCCATCTCCATTCTCAGGCCATTCTCCTcccgtcctccatcctccagaGGACCATGCTGTCACTGAGACCTCTCCACctggcaaaaagaaaaaaggcttcTTCTCTAAAGGGAAGAAGCTCTTCAAGAAGCTGGGCTCCAGCAAGAAGGAATAAAAGCTAAAGACTGTTACATTGACTAATTCGCTGATTGCACTTTCTCCATGTTGATGTTAATTCGTCTGCATGTATATGTGATTTCATGGATAGATTTAGGGTATGACACAGATGTCACTCTCTGTGACCGATTGGtgcttgccttttttttattttctctttttttttgtcttcatttgCTATCAAGATAAAGGTGTGTTCTTCTTGCTTTGCTTCAAACAGTGTTGCTTCTGACTTgtaaaaaacattcacatctTCATCAGACTAGTAAAAACACAGAATATTCTGAAAGCTATGTCTTAACAGTGGGTGACGtcaaattataaacaaacactGAACCAACAAATGCTTTTACAGTTAAAGCAGCTGTAATATAATGCCAGAATTTAACTTTACAGCCTTGATTTACTAAGATTCAAAATAACATGCACTAATTTACATGTGCAGTAAATACATGTGTGCAAATGCTCAGTGATTTACACAGAATAATTGTGTGAATTACATCATGTGCAAAGTAGGTGGAGTTTTGTGTGCACTACATGTTTCTAGTATCCACAGAGAGTTTAAGTATAATGGCAGCTAAATAACAGTgagatggttaaaaaaaaattcaaaacaggCTTCCACAAATTTAACACATGCCCTTCAAGTGTATTAATTTGCGCACACAAACGGTGTCCCTGAAGTGACTTTCAGGTTTACTAAATCACATTGCAGGTACAAAACGAATTGATTTGCAATGACTTCTCCTTGTATTTTGCACCTGTAGGTAGAAATGGCTCAAATTACACAACCATTAATCCAAATACATGAAACGGATGAGATGTGCTATTTTACACATGTTTAAATGGCAACCCTTAGTACTTAGATAGGTATATATGTCTCACACATTCCCTGTCATTTTCTGATATTGACCAAATGATAAATAGTTATCTGAAGACATTAAAAGGTTATATGTGTCATCGGCCGAGTCCGAAGAGATAAAGAGCGGAGCAGAGCTGTCAGAGCAGACATCATAATTACTGTGATTCCAGTGAAGACACTTTAAGACTACAGGTAGTGActtaaaatgatcttttttgGTCCCTGAGTTGAATCGTCATTTCGTCATGGTGAAAACATCAGATCAGATTAGATCAGGTGGATGTGGTTTTTGTGCTTTCAGCCTTTAAGGTTGTCTCATTGCTGTTCATGTATTATACGGCAATAAGGTTAACATTTTGTATCTTTCTGGCAAAAGAATCACATCACAGTGGGAACGAGTAGAATTTGCTCAGCTGCTGTGTGTACTAAATACGTACGTTCCTTCAGTGTATAAGGACAAGCTTCTGGAGGTTTCCTCTGGTCTGACTTTGCCTTGCTCATGGGACTCAAGTAGCACCAAaaggagtttgtgtgtgtaaaacagggaatttcatcatttctgcatgtgtgtacTGAAAATTAGTATAAAAACACATCCACAATATACAGAGTGACTCCTGTCCAATATGCAGTAATCATTTAGCTCTACTTTGATGACTAACCATGTGTAAAGCATAGTATGTTGTTCATCTGTTTCAGTTTGTGTTTCCTGTGTCATGTAGGTTTAAAGCCTGGGTTTAAATGTACGATTTTGGTCAGATTTTGCTGTCACAGGCTCCAATAGCACGTGTACAAGAATTCTTCTTCATGAGTTGAAAATGGTGGTCTTTAAATGCATAATGTGACCAATTTAGCACCATTGCAACCAAAGACAGCAACTGAGTGtcagaaatttttttattaaaagctcAAAATGTGACCTGTGCTACAGTGTTCATCTAAACAGCATAGGATTACATGAAACTCCcagacagctacaaatacggcAAGtcgaaatataaacaaaaatgctgACTTCCTCACATTAAGTAATATAAAGTTACACGCCTAGGCCCTCATACAGTGAGTTGCAAAGCTTGCAAAAAA

Function

symbol description
tspoap1 Enables benzodiazepine receptor binding activity. Predicted to be involved in regulation of presynaptic cytosolic calcium ion concentration. Located in mitochondrion.

GO: NA

KEGG:

id description
K19922 BZRAP1, RIMBP1; peripheral-type benzodiazepine receptor-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921613.2 True 8270 mRNA 0.50 34 6831684 6931919

Neighbor

gene id symbol gene type direction distance location
hspb1 hspb1 coding upstream 47296 6777992 ~ 6784388 (+)
srrm3 srrm3 coding upstream 57777 6691036 ~ 6773907 (+)
LOC113531024 LOC108260100 coding upstream 143708 6668932 ~ 6687976 (+)
c1qbp c1qbp coding upstream 169434 6658053 ~ 6662250 (+)
LOC113531298 myo19,LOC107591502 coding upstream 177782 6633970 ~ 6653902 (+)
mtmr4 mtmr4 coding downstream 148188 7080107 ~ 7149766 (+)
ca4a LOC108259876 coding downstream 231380 7163299 ~ 7179897 (+)
gusb gusb,LOC107591494 coding downstream 292791 7224710 ~ 7238694 (+)
rplp0 rplp0,LOC107654305 coding downstream 343635 7275554 ~ 7279408 (+)
LOC113531674 NA coding downstream 344926 7276845 ~ 7276973 (+)
LOC117596241 NA non-coding upstream 16309 6811118 ~ 6815375 (+)
G382292 NA non-coding upstream 21117 6810353 ~ 6810567 (+)
G382274 NA non-coding upstream 22143 6807179 ~ 6809541 (+)
G382257 NA non-coding upstream 163299 6666639 ~ 6668385 (+)
G382207 NA non-coding upstream 251074 6579113 ~ 6580610 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding downstream 19800 6951719 ~ 6954928 (+)
G382380 NA non-coding downstream 134894 7066813 ~ 7067761 (+)
G382606 NA non-coding downstream 176807 7108726 ~ 7109709 (+)
LOC117596228 NA non-coding downstream 222675 7154594 ~ 7157229 (+)
G382646 NA non-coding downstream 454591 7386510 ~ 7388236 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 447999 6380662 ~ 6383685 (+)
G381893 NA other upstream 588987 6223168 ~ 6242697 (+)
G381835 NA other upstream 650771 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 779328 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 854759 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 30291 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 328334 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 606439 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1210664 8142583 ~ 8161257 (+)
G383217 NA other downstream 1250472 8182391 ~ 8213107 (+)

Expression


Co-expression Network