ppp1cc (ppp1cc,LOC108259981,LOC105902522,LOC107567955)


Basic Information

Item Value
gene id ppp1cc
gene name ppp1cc,LOC108259981,LOC105902522,LOC107567955
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10785557 ~ 10825976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921623.2
CGACTCACTTAAATGAGTCGTTCTTTGAAAGACGATTCCCGGTGTTATGTGTTCATAGGCACGAGCAGATTTATCAGACGTAAAAGCAGCAATAAGGGAGAAGGCAAGGATAAATCCACTAAAGAACCTATCCAAATGTTCTTGTAATTCGTTACTTGTAGTCCTAGGAGTTATCTGGTGTTTAGGTGAAGTGTAAAAAATTACAGGAAATAATcttatttagctagttagcaaggCATGGCCGACATCGATAAGCTCAACATAGACAGCATCATACAGCGCTTGCTTGAAGTGAGAGGGTCCAAGCCTGGTAAGAATGTTCAGCTGCAGGAGAATGAGATTCGTGGTCTTTGTCTGAAATCTCGTGAGATCTTTCTCAGCCAGCCTATCCTGCTAGAGCTGGAGGCCCCACTAAAGATCTGTGGTGACATCCATGGGCAGTACTATGATCTGCTGAGGCTCTTCGAATATGGCGGCTATCCTCCTGAAAGTAACTACCTGTTCCTTGGGGACTATGTGGATCGGGGCAAACAATCACTCGAGACCATCTGCCTTCTGCTGGCCTACAAAATCAAATACCCAGAAAACTTCTTCCTGCTCAGGGGTAACCATGAATGCGCCTCAATCAATCGCATTTATGGTTTCTACGATGAGTGCCGAAGGCGCTACAACATTAAGCTGTGGAAGACATTTACTGACTGCTTCAACTGCTTACCCATTGCTGCCATTGTGGATGAGAAGATCTTCTGTTGCCATGGAGGTTTGTCTCCAGACTTGCAGTCCATGGAGCAGATCCGACGCATCATGAGGCCCACAGATGTGCCTGACCAGGGTCTGTTGTGTGATCTACTGTGGTCCGATCCAGATAAAGATGTGCTAGGCTGGGGCGAGAACGACCGCGGTGTCTCATTTACCTTTGGTGCTGAAGTGGTGGCCAAATTTCTCCATAAACATGACTTAGACCTGATCTGCAGGGCCCATCAGGTGGTGGAGGATGGCTATGAGTTCTTTGCCAAGAGGCAGCTGGTGACGCTTTTTTCTGCACCAAACTATTGTGGCGAGTTCGACAACGCTGGGGCCATGATGAGCGTGGATGAGACCCTCATGTGTTCTTTTCAGATTTTGAAACCAGCAGAGAAGAAGAAGCCAAACTCAAGCCGTCCAGTGACTCCACCAAGGAACATGGTCACCAAGCAAGCAAAGAAATAAGGCCTTCCACCAGTGCACTGGCCATTTTTGGACTTGTGCTATTatgtttctttaatttgtcacagcTTCAGAGTTTTTCTCTGGCATAGTGGTTGTGTGGAATCACTTGAAACTGTCGACAGTTTAGGCTTTTTTTGCACgtatggttttttttcccccatttttgtATTCCATCTATTTTCTTACATCAACTGAGGAAGACCGGACTCCCAAACTGCGTGGGCCTTGAATAATTCAAGATgcacatttcttattttagtttttgtctcatatattattttagtttaatcTCTTATATGCATAGTGGCAAAGCATTCACACCGTTTTGGCACCAGTTAATGCAGGGAACTTTTCTATCTGTGGAAGCACTCCACCATTTCTtgtccataattttttttttggctcccCATGTACccatttaaaccactgtgaaagaaaaaagctaaatataTTCACTTTATGAAATAGATGGCATCTGAAGTAAGATTTCACACTAgctttttgtgtgaatgtgccAGATTTGCTGTTCTATCCAACTGTATTTTAAGAACTGTTTTAAGATAtcctgtgatttattttttttcttaaagataATGAAAACcataaattaattcatgtgtAATGAATCTGTTGATCCGTAGCATTGTATTAAACTGAGCAGATCTAGCTGGGGTGTGTTTCATGAATCAGATTATATCCAAATTAAACAAGCATCAACCTTCAGCTTTTATTTGCTTCAGTTCACTTTATTTTACCAAGAtgccttgtttgtgttttgtttttttcttcagtagtcTTTTTTGTTTAAGATTCAGGAGCTTTTGCATTGGGTATGAGCATGTCAGAATATAGGTTTCTCATAAAGACATTTTGTTGTGCGCATTTTCACTCGAGGCATGCAGGTTTTCAGCATGTCTCTTGATAATGTAGCTCAATATCATGTATGTTGTTAACTTTCAagttctgcattttttaaaatttgttttaagaTATCTTTTGTCTCCCAAACCAACTGTATACAAAAACAATTTGTTGAGTCTTGGCAATAACTCAATTTTCcacattataaataattgtaaaaatgattaaataaaatgtaatgttaattGGGTACACACAAA

Function

symbol description
ppp1cc Acts upstream of or within angiogenesis. Orthologous to human PPP1CC (protein phosphatase 1 catalytic subunit gamma).

NR:

description
PREDICTED: serine/threonine-protein phosphatase PP1-gamma catalytic subunit

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921623.2 True 2330 mRNA 0.41 7 10785557 10825976

Neighbor

gene id symbol gene type direction distance location
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 407419 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 444053 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 501006 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 523812 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 562525 10211942 ~ 10223032 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 199892 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 393082 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 635727 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 817147 11643123 ~ 11681971 (+)
btf3 btf3,LOC107655933 coding downstream 1176298 12002274 ~ 12010222 (+)
G384868 NA non-coding upstream 623 10784701 ~ 10784934 (+)
G384867 NA non-coding upstream 1758 10783404 ~ 10783799 (+)
G384859 NA non-coding upstream 94916 10690140 ~ 10690641 (+)
G384740 NA non-coding upstream 175940 10608952 ~ 10609617 (+)
G384728 NA non-coding upstream 190892 10594450 ~ 10594665 (+)
G384887 mcc non-coding downstream 96908 10922884 ~ 10937401 (+)
G384906 NA non-coding downstream 270866 11096842 ~ 11097935 (+)
G384973 NA non-coding downstream 290402 11116378 ~ 11116582 (+)
LOC117596264 NA non-coding downstream 300407 11126383 ~ 11127885 (+)
LOC113531091 NA non-coding downstream 304900 11130876 ~ 11131867 (+)
G384593 NA other upstream 405892 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 1017521 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 2010423 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 2193176 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 2220300 8558826 ~ 8565257 (+)
ajm1 c28h9orf172 other downstream 471998 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 892042 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 1964925 12790901 ~ 12800917 (+)
G386294 NA other downstream 2995812 13821788 ~ 13824055 (+)
G386325 NA other downstream 2999874 13825850 ~ 13828148 (+)

Expression


Co-expression Network