mis12 (mis12)


Basic Information

Item Value
gene id mis12
gene name mis12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14792133 ~ 14795940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921634.2
CCCCGCTGCCTGTGTTTAAACGATTAAGTGTCACTTTCTGATTCGTCCCGGTTAGTGAAATATGTCATTCTCTTATTGGTACTCTGATATAGGGAAATGTTTGGGGTATTTTCATGCAGCgcagtcatatttataaattatttcgAAACATTGCTAGTcgagaaacaggaaaacagtACATCCTGACCACTAGAGGGCGGAGTACCGACGTCACCGCGTCGTCATCAAGACCACGAAGAAAAACATTTGGCGCGCGGGCTTCGGAAATGGCGGAAGACCGGGAAGCAAACATGGGATCCTTGTCCTCAGATTCCCTCAAACTGTACGAGGCGCAGTTCTTCGGCTTCACCCCTCAGACCTGCATGATGAGGATGAACAGCGCCTTCCAGGACTGTCTGTACGAGATGCTTGTAGTTGTCGAGTCCGTGTTTGTCCGAAAACTGTCCCAGGGCAAAGATCCACCTGAAGAGCTTTCCATAAAGACTCGAGAGTGCACGCAAAAACTGCTGCAGTTCCTGCAGGAACGCTTCAGGAAGCTGTCGATTCGCATGGAAGCTCTGCTGGTGAACAGCGTGCTTTCAGTGCCCGAAAATGTCCTTCTGCCTGAAGACGAGTCGCACCGGAAATACCCAGAGAGCAAAGAACAGCTTTTAAAGCTGGAGGCTTCGATCACAGAGCTGCAAAAGTCTTATGAGGCAGAGTTGTGTGCGAAACAAGCTCTCCTGGCCGAGCTCGAGGAGCAGAAGGAAACACAGGAGCAGCTAGACGAGGTGCTGCAGTGGATCGACGAGCTGCGTTTATCCTGGAGGAAGGAGGGAATGGGAAATATCCGAGACAGCTTCCAGAATATGATTGAGACTGTGAACCAGCTGCAGGGTGAGATGGGGAAGATCCGGAAGAAGAGCAAATCCCTAGATGAAGTGTGATATCCTTTTCTCCCGTGCCTTCATCGATGATATTGTCAGTTGCACACCAGTGGTACTTGGCTGTGCAAAGATGGTCCATCCACAAGGGGGTGGCAGCGCTCAGTCCAATTATGCCACCTTGCTGAAACATCAGATGTGCTCTTCTCAGCAAGATGTCACATTTGGAAGCCTGGAGTTCCTTCTTTGACATTTGAAATGCAGTCACCCAAAATCCCCTCCTTTTCCACCAAATCCATTGTCTATACCACACTAAGGCCAGGTTCATTTGTATTCTCTGCTTTTATCTTCAGTGCAGTGAGATCAAAGTGAATTTCCTATAAGCCCAAAATTGTGTGCTTTCCTTCTTGTTCACAGCAGGAGGCCTGTAGACCCAACTAAGGGTCAGTTCTTTTACACGGTGCATTGTGCACCATGATTGTAGATACTGTTATTAGATGCTTTTTGTTAAGAACTGGCACTTTAGCTTTGAACAAAACCtaacttttataaataaattgtcagtTTCCTTTGTAAATACAATAAAAGTCCATGTTCTTTTTTA

Function

symbol description
mis12 Predicted to be involved in kinetochore assembly; mitotic sister chromatid segregation; and protein localization to kinetochore. Predicted to act upstream of or within cell division and mitotic cell cycle. Predicted to be located in kinetochore and nucleus. Predicted to be part of nuclear MIS12/MIND complex. Orthologous to human MIS12 (MIS12 kinetochore complex component).

NR:

description
protein MIS12 homolog

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11543 MIS12; kinetochore-associated protein MIS12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921634.2 True 1467 mRNA 0.47 2 14792133 14795940

Neighbor

gene id symbol gene type direction distance location
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding upstream 36070 14748438 ~ 14756063 (+)
rad51d rad51d coding upstream 698778 14086642 ~ 14093355 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 902866 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 917224 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 981579 13806887 ~ 13810554 (+)
mcama LOC108260060 coding downstream 15162 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 62617 14858557 ~ 14860744 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding downstream 66418 14862358 ~ 14916498 (+)
drd2b drd2b,LOC108259734,LOC108428674,LOC107664308,LOC107745132,LOC107691748 coding downstream 301128 15097068 ~ 15138075 (+)
layna layn coding downstream 438979 15234919 ~ 15242995 (+)
G387160 NA non-coding upstream 76078 14708856 ~ 14716055 (+)
LOC117596237 NA non-coding upstream 608082 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding upstream 616708 14170058 ~ 14175425 (+)
G386490 NA non-coding upstream 661506 14130171 ~ 14130627 (+)
G386458 NA non-coding upstream 716073 14073248 ~ 14076060 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding downstream 38979 14834919 ~ 14924865 (+)
G387197 NA non-coding downstream 60328 14856268 ~ 14868701 (+)
G387208 NA non-coding downstream 138764 14934704 ~ 14936042 (+)
LOC113531625 NA non-coding downstream 386373 15182313 ~ 15204882 (+)
G387383 NA non-coding downstream 409814 15205754 ~ 15207897 (+)
G386325 NA other upstream 963985 13825850 ~ 13828148 (+)
G386294 NA other upstream 968078 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1991216 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2957089 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 3466078 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 367444 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 449065 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 558420 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 565418 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1011609 15807549 ~ 15859905 (+)

Expression


Co-expression Network