tlcd5b (tmem136,LOC108260061,LOC108428603)


Basic Information

Item Value
gene id tlcd5b
gene name tmem136,LOC108260061,LOC108428603
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14858557 ~ 14860744 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921636.2
TGGAAAATATTAAGATGTAATAATAGTACTCTAGTCTGACGAGACAGACCTCCAGCAGAGAGCCAATATAGGTTATTGAGGACAGGATGTGTCTGTTTGGAGGAGATTGGTGAAAGGCAATGCCTAAATGTCTGATGCAGCAGAAGGTGGGATTTTGTGAAGGCTGAGCTCAGCCATGACGTTATTTCTAGTCGAGACAAGCTGCAGCCTTATTGGCTGGCTTTTTCTGTACATTCTGCTGTGTCACGTGAACAGAAAGCAAAATGCAGAGTGGAACTGCAGACTCATCACCCTGCTCCATGGGGTCCTCATAGTTTTGCTAACTGCTTACATCGGGTTTGTTGATGGTCCGTGGCCATTCACGCATGCAGGctcagaaaacacagaactcCAGATCCTAGCCCTGCTCCTCAGTCTGGGCTACTTCCTCTTTGACATGGCCTGGTGTGTGTACTTCCAAACAGAGGGTCCTGTTATGCTGGCCCATCACACCCTAAGCATCCTGGGCATTGTGTGTGCTCTGGGAATGGGTGAATCAGGCATCGAGGCGTGTGCGGTGCTCTTCGGCAGTGAAATCACCAATCCACTCCTGCAGGCCCGCTGGTTCCTCAAGCAGATGGGCCGCTACGACAGCCTGAGCGGTGACCTTGTCGACCTCCTTTTCATCACACTCTTCGCCAGTGTGCGGATCGGTGTCGGCGGCCGCATGCTGTACTGTGAGCTGGTATCACCAAAACCCAAACTGGTCATGAAGGTGGGTGGGGTGGCCATCTACGCCCTCTCCTGCGTCTTCATGGTGGACATTGCCTGCTTTGCTTGTCGGAAGACCCGCACCAAGTATAGACGATGGCAGGAACAGCAGAAGCTTAATAATGCTAATGGACATATTGGGTGAAATGAGCTAAAGCAGGTGGACAATGGAGGGaacatttttactttgtttatgaCATGAAATAAAGGCTGTTTATAACAA
>XM_034300876.1
TGGAAAATATTAAGATGTAATAATAGTACTCTAGTCTGACGAGACAGACCTCCAGCAGAGAGCCAATATAGGTTATTGAGGACAGGATGTGTCTGTTTGGAGGAGATTGGTGAAAGGCAATGCCTAAATGTCTGATGCAGCAGAAGCTCAGCCATGACGTTATTTCTAGTCGAGACAAGCTGCAGCCTTATTGGCTGGCTTTTTCTGTACATTCTGCTGTGTCACGTGAACAGAAAGCAAAATGCAGAGTGGAACTGCAGACTCATCACCCTGCTCCATGGGGTCCTCATAGTTTTGCTAACTGCTTACATCGGGTTTGTTGATGGTCCGTGGCCATTCACGCATGCAGGctcagaaaacacagaactcCAGATCCTAGCCCTGCTCCTCAGTCTGGGCTACTTCCTCTTTGACATGGCCTGGTGTGTGTACTTCCAAACAGAGGGTCCTGTTATGCTGGCCCATCACACCCTAAGCATCCTGGGCATTGTGTGTGCTCTGGGAATGGGTGAATCAGGCATCGAGGCGTGTGCGGTGCTCTTCGGCAGTGAAATCACCAATCCACTCCTGCAGGCCCGCTGGTTCCTCAAGCAGATGGGCCGCTACGACAGCCTGAGCGGTGACCTTGTCGACCTCCTTTTCATCACACTCTTCGCCAGTGTGCGGATCGGTGTCGGCGGCCGCATGCTGTACTGTGAGCTGGTATCACCAAAACCCAAACTGGTCATGAAGGTGGGTGGGGTGGCCATCTACGCCCTCTCCTGCGTCTTCATGGTGGACATTGCCTGCTTTGCTTGTCGGAAGACCCGCACCAAGTATAGACGATGGCAGGAACAGCAGAAGCTTAATAATGCTAATGGACATATTGGGTGAAATGAGCTAAAGCAGGTGGACAATGGAGGGaacatttttactttgtttatgaCATGAAATAAAGGCTGTTTATAACAA

Function

NR:

description
transmembrane protein 136-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921636.2 True 973 mRNA 0.50 3 14858557 14860744
XM_034300876.1 False 951 mRNA 0.50 3 14858557 14860744

Neighbor

gene id symbol gene type direction distance location
mcama LOC108260060 coding upstream 2616 14811102 ~ 14855941 (+)
mis12 mis12 coding upstream 62617 14792133 ~ 14795940 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding upstream 102494 14748438 ~ 14756063 (+)
rad51d rad51d coding upstream 765202 14086642 ~ 14093355 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 969290 13876835 ~ 13889267 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding downstream 1614 14862358 ~ 14916498 (+)
drd2b drd2b,LOC108259734,LOC108428674,LOC107664308,LOC107745132,LOC107691748 coding downstream 236324 15097068 ~ 15138075 (+)
layna layn coding downstream 374175 15234919 ~ 15242995 (+)
gig2p LOC108259973 coding downstream 443859 15304603 ~ 15309671 (+)
si:dkey-71l1.1 tomm40l,si:dkey-71l1.1,LOC108259972,LOC103030645,LOC107691796,LOC107745123,LOC107603199,LOC107663776,LOC107574698 coding downstream 453363 15314107 ~ 15321357 (+)
G387160 NA non-coding upstream 142502 14708856 ~ 14716055 (+)
LOC117596237 NA non-coding upstream 674506 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding upstream 683132 14170058 ~ 14175425 (+)
G386490 NA non-coding upstream 727930 14130171 ~ 14130627 (+)
G386458 NA non-coding upstream 782497 14073248 ~ 14076060 (+)
G387208 NA non-coding downstream 73960 14934704 ~ 14936042 (+)
LOC113531625 NA non-coding downstream 321569 15182313 ~ 15204882 (+)
G387383 NA non-coding downstream 345010 15205754 ~ 15207897 (+)
G387386 btg4,LOC107745130,LOC107556417 non-coding downstream 355233 15215977 ~ 15218110 (+)
G387388 NA non-coding downstream 405363 15266107 ~ 15269909 (+)
G386325 NA other upstream 1030409 13825850 ~ 13828148 (+)
G386294 NA other upstream 1034502 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 2057640 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 3023513 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 3532502 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 302640 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 384261 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 493616 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 500614 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 946805 15807549 ~ 15859905 (+)

Expression


Co-expression Network