ca4a (LOC108259876)


Basic Information

Item Value
gene id ca4a
gene name LOC108259876
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7163299 ~ 7179897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921688.2
cgcacacacacacatacacacccgcacgcaggcacgcacacacacacgcgcgcacacacacacaggagaatgTGAGGAAGGTGCGTGATATGAGCGCATCGATCAGCAGCCATGCTCTCCGCCTGCGTGTTTATTGGAGGGAGGTGCCACCGGAAACGCACTAACGGCTAATAAATAAGCGCGACACTCCTGAAAGCCGATCAGCATCAAAACgaaaagagaaaacaacaacaacaacaaaaaaacatcaagggTCCCATTGTGTGTTGGTGCAGCTGCTGAAGCTCCACAATGCGCGCGCACATTCCGCGTCTTCTCCTCCTCGCGTCGGTCTGGAGCGTGTGCACCGGTTCAGGAAAATGGTGCTATCAGTCCCAGGTGACCTGTGATACACCCTGCAAAGGACCAGATTCTTGGCATGAGGTGCATGAAGACTGCGGGAAATTCAAACAGTCACCCATTAATATAGTGACCAAGAAAACCGAACTGGACCACAATCTGACACCACTTATATTTAGCGGCTACCAACAGGCCTTCAGTGGCATCCTGAAAAACAACGGTCACTCTGTGAGGGTATCTGTGCCCGAGCTGGCCAATGTGAGCGGAGGGAACCTCAAAGCCACTTACAAAGCCGTGCAGTTTCACTTCcactggggagaaaatggaggcCCCGGGTCTGAACACACTATCGATGGAGAGCAGTACCCCATGGAGATGCATATTGTTCACATGAGGCAGGATTTTAAATCTTTGGAAGAAGCACTGAAGGACCCAACTGGAGTTGCGGTGCTGGGATTCTTTTATGAGgAATCAAAGAGTGCAAACAAAAAGTATGATGGACTAATACAAGCTTTGAAAAAAGTGGAACATTATAATACAAACACAACGCTCACTGGTATCTCCCTGAGTAATCTCATATCCAGTGAGGAGAACATGACCAAGTATTATCGTTATGAAGGCTCTCTGACCACCCCTTACTGCACTGAGGCAGTGATATGGACTGTGTTTGAAATCCCCATCCCACTGAGCAAAGATCAGCTCTCAGCATTCTCCTCCTTGAAGTTCGAGGGTGATAAGCCCATGATAAAAACCTTCAGACCAGTGCAGCCACACAAGAGCCGTACGGTGTACCACTCCGGCAGCACTGTAGTCATGCTCAGCTTCACTCTcctcctggtgtgtgtgtgttcagctctgGGCCTTTCCCAGCTCTACTAGAGGATAAGCCAAGCCCCCGTCCATCCACGCACAGAACTGAAAAGCCAAACAGATTGACAGCCACTTCTGTATGTGCATATCACAGTGAATGCACTTTGGTTTTGGCCTCCATCTTGGAGGTGCGACTTCATTTCCATGTAGGCACATGACATGCCGGTGTTTTGGAGGGCTTATCTGGAAAACAGAACTGTGTTCATCGCTATCAATAGAAACCCAGCTAAGTCCTCAGGAGAGAGCCAGAGAGGTTATAAATGCCTGTCCTTTATCTATCTGAGGCACAGCCAAACTGGGGCCTcatgcacatacatatacacataacacgcacacatacatgtATGAGCAGTCAGCATGTGGCCATTCATCTGTCAACATAGTgtaatgatattatttataggtTAGATTTTTACgcaaagacacaaacacacacacacacacacacacacacacacacaaaacacagctaAAGAATGATGAACACCTCACAGTGATGTTCTGAATTTTAGTGTCATTTCTGAAGCGAGCAACTTCATGAATTACAGGTCACTGGTCAAATCTAAGGTCATTCTCCACATCCCCTCTCTTCTGAGATCAAATTATGGCAGTGACACAGGCCGTAAAGGTGAACCCTATTACAGTCACGTACACGTGATATAAATAGACAGGAGTGATAATATACAGTGAGCTGTTGCTTATTTTAAACTGCATATATAAGTAACTTTCTTTTAATGTACAAGGCCTCCATCCCATTCATTACATTCGTTAGATAGTGGAAGCAGGAAACCTGTTTCCTTTTCAAAATTCAAAGCATTTCCTGACAAGCTGAAATTATTACAAGCAACATTTgaatctctgtgttttttttttaattacagtaattcTTTTAGTGATCACTTATCTTGGGGTTGCACAtaagtcttaaaaaaaaaagctatgttTCCTCAGTGTCATGGCAGAAGGTGATGCCATTAGCATgtcacattttaacatttttagcaTGGTGAACAACAGCAATTTCCTTAGTATGTAAGCCCTTAGAAACTGTAGATACCAACACCCAAGACATTTACTTCCTCATAGACAGTGCACCAGTAAGCAAAGGAACTCTGGACTCGACAGTTTTTATAATACCTCTATTTGTTGTAGCATTTAGGTATTGATTCATTGAAGCAGCACAGTCCAAATCTCCCACAGGTTTTCTATCTCCAGTCTGGCATACAGTCGCTTTGGAGGCTTTTTACATTGAAGAGATTCTACTTTTTAGATGGTGGATGTAGATCATAGGGCACCTCAACAGTTTTTTGTCAGTGTGTAAATAACTTTCAGTGCTATCAAAAATGCCACAGTGTGGTGTTGTTAGCTTCTTAGATGAAAGCAGGTCAGCTAAAAATAACCAAAAGTGGAAGAAGTCTTAcacaaaatatcacaaactGAGCCATCTGGTGTGCTGAAACATATAAAGATCATATGGAGAGAGActtgaaaatataataataattatattaaaatatagtaaaatatatttatattaaaatggaaTCATACAAATAGCCACAATAACTAGGTTTATTATCTTATTGTCTCTCATGGGTGGCCCTCATGCTTCTCAGTAACATCGGCATAAACTGAGCTTATTTCTAATCATTCTTAACAAGTACAAATGTTTCAAGTATTACTCAGAATCATCACCCATTGAGCCAGGTAAAGATTACTTTTTAGGAATGGTCCAATCCTAACTCCAATTTTCTGCATCAAATCTGTGAAAATTTCCCCACACAGCTGATGCATTTTAATCTTGAACCTGTTTTGATACTGATCGCCAAAGCTTCATCAGACCTACTACTACAATACACTTTCCCCTCATTGGAAAGTTTCCCCACATGACCACATGATAGGATCACATGACCAGTGTTCATGTTCAGTTTTCTGTGGGTCTCAGAAGCCCTGAATGTGATTGTACTGTGAATCTTTTCAAAAGAATATAACTGCTAGGATTTGCGGGGAAAAGGGCACAGAAGACCAAAGCAGCAATATGATAtaaagatgcttttttttttaaacagaaaactaTATTTATTTTGGTGTATGTTAATATTCAGACCACTGTTCTAATCGGTGATGCaatttgtgatgtaaaaatatCCTATGGAAATagaagaaaactgaaaatgtgaTTGCTGTTTTGTGATTTAGTTCACACAAGATATTGATAATATTTTCTGTaaacatgtatttaaatatataatgtgattATATATGATGCTGATCATTAAGgagataaatataaaaatgattgcAAATGA
>XM_034300572.1
cacgcacacacacacatacacacccgcacgcaggcacgcacacacacacgcgcgcacacacacacaggagaatgTGAGGAAGGTGCGTGATATGAGCGCATCGATCAGCAGCCATGCTCTCCGCCTGCGTGTTTATTGGAGGGAGGTGCCACCGGAAACGCACTAACGGCTAATAAATAAGCGCGACACTCCTGAAAGCCGATCAGCATCAAAACgaaaagagaaaacaacaacaacaacaaaaaaacatcaagggTCCCATTGTGTGTTGGTGCAGCTGCTGAAGCTCCACAATGCGCGCGCACATTCCGCGTCTTCTCCTCCTCGCGTCGGTCTGGAGCGTGTGCACCGGTTCAGGACCAGATTCTTGGCATGAGGTGCATGAAGACTGCGGGAAATTCAAACAGTCACCCATTAATATAGTGACCAAGAAAACCGAACTGGACCACAATCTGACACCACTTATATTTAGCGGCTACCAACAGGCCTTCAGTGGCATCCTGAAAAACAACGGTCACTCTGTGAGGGTATCTGTGCCCGAGCTGGCCAATGTGAGCGGAGGGAACCTCAAAGCCACTTACAAAGCCGTGCAGTTTCACTTCcactggggagaaaatggaggcCCCGGGTCTGAACACACTATCGATGGAGAGCAGTACCCCATGGAGATGCATATTGTTCACATGAGGCAGGATTTTAAATCTTTGGAAGAAGCACTGAAGGACCCAACTGGAGTTGCGGTGCTGGGATTCTTTTATGAGgAATCAAAGAGTGCAAACAAAAAGTATGATGGACTAATACAAGCTTTGAAAAAAGTGGAACATTATAATACAAACACAACGCTCACTGGTATCTCCCTGAGTAATCTCATATCCAGTGAGGAGAACATGACCAAGTATTATCGTTATGAAGGCTCTCTGACCACCCCTTACTGCACTGAGGCAGTGATATGGACTGTGTTTGAAATCCCCATCCCACTGAGCAAAGATCAGCTCTCAGCATTCTCCTCCTTGAAGTTCGAGGGTGATAAGCCCATGATAAAAACCTTCAGACCAGTGCAGCCACACAAGAGCCGTACGGTGTACCACTCCGGCAGCACTGTAGTCATGCTCAGCTTCACTCTcctcctggtgtgtgtgtgttcagctctgGGCCTTTCCCAGCTCTACTAGAGGATAAGCCAAGCCCCCGTCCATCCACGCACAGAACTGAAAAGCCAAACAGATTGACAGCCACTTCTGTATGTGCATATCACAGTGAATGCACTTTGGTTTTGGCCTCCATCTTGGAGGTGCGACTTCATTTCCATGTAGGCACATGACATGCCGGTGTTTTGGAGGGCTTATCTGGAAAACAGAACTGTGTTCATCGCTATCAATAGAAACCCAGCTAAGTCCTCAGGAGAGAGCCAGAGAGGTTATAAATGCCTGTCCTTTATCTATCTGAGGCACAGCCAAACTGGGGCCTcatgcacatacatatacacataacacgcacacatacatgtATGAGCAGTCAGCATGTGGCCATTCATCTGTCAACATAGTgtaatgatattatttataggtTAGATTTTTACgcaaagacacaaacacacacacacacacacacacacacacacacaaaacacagctaAAGAATGATGAACACCTCACAGTGATGTTCTGAATTTTAGTGTCATTTCTGAAGCGAGCAACTTCATGAATTACAGGTCACTGGTCAAATCTAAGGTCATTCTCCACATCCCCTCTCTTCTGAGATCAAATTATGGCAGTGACACAGGCCGTAAAGGTGAACCCTATTACAGTCACGTACACGTGATATAAATAGACAGGAGTGATAATATACAGTGAGCTGTTGCTTATTTTAAACTGCATATATAAGTAACTTTCTTTTAATGTACAAGGCCTCCATCCCATTCATTACATTCGTTAGATAGTGGAAGCAGGAAACCTGTTTCCTTTTCAAAATTCAAAGCATTTCCTGACAAGCTGAAATTATTACAAGCAACATTTgaatctctgtgttttttttttaattacagtaattcTTTTAGTGATCACTTATCTTGGGGTTGCACAtaagtcttaaaaaaaaaagctatgttTCCTCAGTGTCATGGCAGAAGGTGATGCCATTAGCATgtcacattttaacatttttagcaTGGTGAACAACAGCAATTTCCTTAGTATGTAAGCCCTTAGAAACTGTAGATACCAACACCCAAGACATTTACTTCCTCATAGACAGTGCACCAGTAAGCAAAGGAACTCTGGACTCGACAGTTTTTATAATACCTCTATTTGTTGTAGCATTTAGGTATTGATTCATTGAAGCAGCACAGTCCAAATCTCCCACAGGTTTTCTATCTCCAGTCTGGCATACAGTCGCTTTGGAGGCTTTTTACATTGAAGAGATTCTACTTTTTAGATGGTGGATGTAGATCATAGGGCACCTCAACAGTTTTTTGTCAGTGTGTAAATAACTTTCAGTGCTATCAAAAATGCCACAGTGTGGTGTTGTTAGCTTCTTAGATGAAAGCAGGTCAGCTAAAAATAACCAAAAGTGGAAGAAGTCTTAcacaaaatatcacaaactGAGCCATCTGGTGTGCTGAAACATATAAAGATCATATGGAGAGAGActtgaaaatataataataattatattaaaatatagtaaaatatatttatattaaaatggaaTCATACAAATAGCCACAATAACTAGGTTTATTATCTTATTGTCTCTCATGGGTGGCCCTCATGCTTCTCAGTAACATCGGCATAAACTGAGCTTATTTCTAATCATTCTTAACAAGTACAAATGTTTCAAGTATTACTCAGAATCATCACCCATTGAGCCAGGTAAAGATTACTTTTTAGGAATGGTCCAATCCTAACTCCAATTTTCTGCATCAAATCTGTGAAAATTTCCCCACACAGCTGATGCATTTTAATCTTGAACCTGTTTTGATACTGATCGCCAAAGCTTCATCAGACCTACTACTACAATACACTTTCCCCTCATTGGAAAGTTTCCCCACATGACCACATGATAGGATCACATGACCAGTGTTCATGTTCAGTTTTCTGTGGGTCTCAGAAGCCCTGAATGTGATTGTACTGTGAATCTTTTCAAAAGAATATAACTGCTAGGATTTGCGGGGAAAAGGGCACAGAAGACCAAAGCAGCAATATGATAtaaagatgcttttttttttaaacagaaaactaTATTTATTTTGGTGTATGTTAATATTCAGACCACTGTTCTAATCGGTGATGCaatttgtgatgtaaaaatatCCTATGGAAATagaagaaaactgaaaatgtgaTTGCTGTTTTGTGATTTAGTTCACACAAGATATTGATAATATTTTCTGTaaacatgtatttaaatatataatgtgattATATATGATGCTGATCATTAAGgagataaatataaaaatgattgcAAATGA

Function

NR:

description
carbonic anhydrase 4-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18246 CA4; carbonic anhydrase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921688.2 True 3518 mRNA 0.41 8 7163301 7179897
XM_034300572.1 False 3472 mRNA 0.41 7 7163299 7179897

Neighbor

gene id symbol gene type direction distance location
mtmr4 mtmr4 coding upstream 13533 7080107 ~ 7149766 (+)
LOC113531112 tspoap1 coding upstream 231380 6831684 ~ 6931919 (+)
hspb1 hspb1 coding upstream 378911 6777992 ~ 6784388 (+)
srrm3 srrm3 coding upstream 389392 6691036 ~ 6773907 (+)
LOC113531024 LOC108260100 coding upstream 475323 6668932 ~ 6687976 (+)
gusb gusb,LOC107591494 coding downstream 44813 7224710 ~ 7238694 (+)
rplp0 rplp0,LOC107654305 coding downstream 95657 7275554 ~ 7279408 (+)
LOC113531674 NA coding downstream 96948 7276845 ~ 7276973 (+)
LOC113531673 NA coding downstream 97702 7277599 ~ 7277727 (+)
LOC113531518 rab35,LOC108259874,LOC108429727,LOC103036303,LOC105902527 coding downstream 99749 7279646 ~ 7291137 (+)
LOC117596228 NA non-coding upstream 6070 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 53590 7108726 ~ 7109709 (+)
G382380 NA non-coding upstream 95538 7066813 ~ 7067761 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding upstream 208371 6951719 ~ 6954928 (+)
LOC117596241 NA non-coding upstream 347924 6811118 ~ 6815375 (+)
G382646 NA non-coding downstream 206613 7386510 ~ 7388236 (+)
G382667 LOC108260439 non-coding downstream 269014 7448911 ~ 7450445 (+)
G382686 NA non-coding downstream 317869 7497766 ~ 7500585 (+)
G382929 NA non-coding downstream 466239 7646136 ~ 7646471 (+)
G382931 NA non-coding downstream 469412 7649309 ~ 7649523 (+)
LOC113531592 rnf43 other upstream 105100 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 779614 6380662 ~ 6383685 (+)
G381893 NA other upstream 920602 6223168 ~ 6242697 (+)
G381835 NA other upstream 982386 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 1110943 5990022 ~ 6052356 (+)
LOC113531088 NA other downstream 80356 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 358461 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 962686 8142583 ~ 8161257 (+)
G383217 NA other downstream 1002494 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1378929 8558826 ~ 8565257 (+)

Expression


Co-expression Network