rad51d (rad51d)


Basic Information

Item Value
gene id rad51d
gene name rad51d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14086642 ~ 14093355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921694.2
GCTCTGTCAATCTATTAGTCCTTGTATCGATAAGGCGCGAGTCGCCACTTTGCAAGATGTATTACTGAATGCTTCCACTGGAAGTGACATGGTGCTTCTGAGAGAAGGTCTGTGTCCAGGGTTGAGTGAAGACCTCATCAAAGCTCTACATGGAGGAGATGTTAGAACAGTCGAGGACCTTGTCTTGTCTGACCCTGAACATCTGGCCCAGAAATGCTCAGTGTCCTATAAGGCCTTAGTGGCAGTTCGGCGTGTGCTTCTGGCTCAGCACGCCGCGTTTCCGGTTTCAGGAGCCGACCTGTACGACGAGCTGCTGAGCTCCACTTCCATCCTCTCCACAGGAATCGCTAGTGTGGATAAACTTCTTGACTCGGGTCTGTACACAGGCGAGATCACTGAACTGTGTGGAGGACCAGGAACAGGTAAAACCCAGATGTGCTTCAGCGTAGCTGTTAACATTGCACATGAGCTGAAGCAGAAGGTAATGTACATCGACACAAACGGAGGAATATGTGCTAACCGGCTGCTTCAGATGCTCCAGCAGAAAACCGTCAACACAGCAGAGCAGATGAATGCTCTTCAGAGGATCAGTGTGCTCCGAGTGTTTGATGTCTTCGCCTTACTGTCCTCCCTTCAAAATCTAAGAGCCAGCGGTCTCCAGAAGGGAGCTGTTGGTGGTTCAGTCAAAGCCGTGATTGTGGATTCCGTGTCAGCCGTGCTCTCCCATATGCTTGGaggaaaacagaatgaagGTATGTCCTTGATGATGCAAGTAGCTACAGAGCTGAAGATCATCGCCAAAGATTTTAACGTAGCCGTTCTGGTGACCAATCATGTAACGCGAGATGGGAACAATCAGCTGAAGGCAGGACTGGGGCAGTCATGGAGTCACGTTCCACGCACACGAATCGTCCTGCAGCGAGTGGAGAAGCCCGGAGCTTCCTCCAGCTTACGCACAGCCACTCTTCTTAAATCCTCTCGACAGccttgcTACATGATTGAGGAGTTTGATTTGAGTCCACAGTCTCAGGGAGAGTCACGGACTGGGTTTGCAGGGAAGAGGAAACTGGACACTGATTCATAAGAAGCTGCACTGGTACCAAACATTTAGAAAGGTTATGGAAAATGATGTGGAATATATTTGCATGCTTTCAGTAGGAAAGGTCTAGTTTTATACACAGAGTACTACAGAATTTGTATTGCTGTATATTCtttaattactgtaaatataaatgtgtattgtgtttttttttttttttaccttttaacCATATCTGGACTGTATAAGCATCAACTTGCGTTCTGAAAGTTACATTTTTGTACGTAGTCATcagttaaggaataaaacaggaaggaaaataatcaacaaccaccctgaagttgagtATAGCACGGcccaaaaatgttttattcctcttataccacagcaatttgccaacgattacattacttttattaaagaatgatgaaaCAAGCGATTTCCTGTTAACAACTTTatcctgtgtaagttgttactatagtaactataatgtattaataggagcacattaatataaaccttaatagaaaatgaatcagtgctgtggtataacatcATTCATTAAATACACTACGAAATACACCAGTAAACGTACAAGTCTTTAAATTTCCATGTAGCTAGCTGGGATATGTTGGAATAgttactttttaaagaaaaaaaaaatgtaaacacagcGATAAATGAGCagagtgtttatttttctggtGAGAAATGTTCAATGTTTCAATtatgtcattgtttttttttttttaaaaaacaaaacaaaa

Function

symbol description
rad51d Predicted to enable ATPase, acting on DNA and single-stranded DNA binding activity. Predicted to contribute to four-way junction DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Rad51B-Rad51C-Rad51D-XRCC2 complex. Predicted to be active in centrosome and replication fork. Human ortholog(s) of this gene implicated in hereditary breast ovarian cancer syndrome. Orthologous to human RAD51D (RAD51 paralog D).

NR:

description
DNA repair protein RAD51 homolog 4

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10871 RAD51L3, RAD51D; RAD51-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921694.2 True 1806 mRNA 0.42 11 14086642 14093355

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 197375 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 211733 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 276088 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 322557 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 334819 13744586 ~ 13751823 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 655083 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 698778 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 717747 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 765202 14858557 ~ 14860744 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding downstream 769003 14862358 ~ 14916498 (+)
G386458 NA non-coding upstream 10582 14073248 ~ 14076060 (+)
G386476 NA non-coding upstream 28139 14058228 ~ 14058503 (+)
G386462 NA non-coding upstream 48720 14037683 ~ 14037922 (+)
G386457 NA non-coding upstream 53401 14032835 ~ 14033241 (+)
G386416 NA non-coding upstream 97326 13988556 ~ 13989316 (+)
G386490 NA non-coding downstream 36816 14130171 ~ 14130627 (+)
LOC117596237 NA non-coding downstream 58789 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding downstream 76703 14170058 ~ 14175425 (+)
G387160 NA non-coding downstream 615501 14708856 ~ 14716055 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding downstream 741564 14834919 ~ 14924865 (+)
G386325 NA other upstream 258494 13825850 ~ 13828148 (+)
G386294 NA other upstream 262587 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1285725 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2251598 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2760587 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1070029 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1151650 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1261005 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1268003 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1714194 15807549 ~ 15859905 (+)

Expression


Co-expression Network