slc12a9 (slc12a9,LOC108260024,LOC108429000,LOC107599203,LOC107746400,LOC107663403,LOC107734138)


Basic Information

Item Value
gene id slc12a9
gene name slc12a9,LOC108260024,LOC108429000,LOC107599203,LOC107746400,LOC107663403,LOC107734138
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16008522 ~ 16020470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921721.2
GTGCTAGTACATTATCCTAATGCTAATACTGCTCAATAATACACATCACTACTGAGAGTCTAGCGTACTAATTAGTATGTGAGGCCAAGGTGAGGACGTATCCATGGTTACGGTCAAAGTAGTCACGTGCAGTAGGTGgcgtacttttttttttcccatactATTTAGCAGAGTAGCTAGCGGATTGGGACGGAGCCAAACTGCAGGCAGGAAGAGTCGGTTCCAAACAGGGATGCTGTTAACAAACTGATAGCTACAGAAGAAATACatcaagaaataaataaatttagccTTTTTGGTCGTGAGTGAAATGAGTGAAAGGTCGGTTAAGAACTCttcatgttgatttttttctctcttcgcGTCTGCAGCTtgttttgaagaagaagaagaagaagagttgCACAGTTCATGGCGGGGGAGCGGAGTCGTCTCCTGCCCCATGGAGCGTACAGCATGTTGGGGGACAGTGCAGACTCCAGGAAGGGGTCCACGTCCGGGGAAGACGCTTCCAAATCCAATCCCCGCAAACTCAACACCTTCTTTGGGGTGATGGTGCCCACCATCCTGTCCATGTTCAGCATCGTCCTCTTCCTGCGCACAGgttttGTCGTTGGTCATGCTGGTCTTCTCCAAGGATTGCTCATGTTGATTGTGgcatatttcatcatttccttGACCATCCTGTCGATCTGTGCTATCTCTACTAATGGGGCAGTGCAGGGGGGCGGAGCTTACTACATGATCAGTCGCTCTCTGGGTCCGGAGTTTGGAGGCAGCATCGGCCTCATGTTCTACCTGGCGAAGGTGTGTGCATGCGGCGTGTACGTGCTCGGGCTGGTGGAGGCCATACTCAACGTTTTTGGACAGGATCCAGTTGCCGGGGTGCCGGAGGGAGTGCGCGTCCTGCCTCAGGGTTACTGGTTCTCAGTTCTCTACTCCTccgtgctgctgctgctctgttTGGTCATTTGTCTGATCGGCGCTCACATCTACGCCAAAGCCTCCTTCCTCATCCTGCTGGTGGTGAACGTGGCCGTGCTGTCCATCCTCATCAGCCCGCTAGCTGTCGGGCCACGCAACTTCAGCTTCACACACAAACTGGGCCCGAACAACACAGTCACGCACAACGGCAGCTACACAGGCTTCAACAGCAGCACACTCGCCAATAACTTGTGGTCGGGCTACTCTTTAGACTACAGTACAAACAGGGTGATGTCATTTTCCACGGTCTTTGCTGTGATGTTCACCAGCTGCACTGGCATCATGGCAGGAGCCAATATGTCAGGTGAACTGAAGAACCCCAGTGTGGCCATTCCAAAAGGCACCATCATGGCTGTGTTGTACACCTTCATCGTCTACATACTCCTCTTCTTCCTCGTCAGCTCCACCTGTGACAGgGTGTTGCTGATTAATGACTTTGCCGTATTCCAGCAAATAAACCTGTGGGCTCCGTTTGTAATCATCGGCGTGTACTGTGCCTCACTATCTGCAGCCATGTGCTCACTAATTGGAGCTTCACGCATCCTACATGCCCTTGCAATTGACCGGctctttgGTTTGCCCCTGGCCCCTGCTGCCATCACCTCCCGCTCGGGAAACCCCTGGGTCTCTGTACTCTACACCTGGGCACTGGTGCAGtgcacaGTGTTTGCAGGTCAGCTGAATGTGATAGCAGGTTTGGTGACTGTCTTCTATCTGCTGTCCTATGCTGCAGTAGATCTGGCCTGTCTGGCTTTGGAGTGGGCATCTGCTCCCAATTTCAGGCCTACGTTTCAGTACTTCTCGTGGCACACGTGCCTGCTGGGCCTGATTAGCTGTCTGGTGATGATGTTTGTGATAAATCCAGTATACTCATCAGCCAGCATTGTGGTCTTACTGCTGTTGCTGCTCTTCCTGCACTATCGATCGCCCACAAGCAGCTGGGGCTACATCAGTCAAGCGCTCATCTTccatcagGTGCGGAAGTATTTGCTGATGCTGGACTCGAGGAAGGACCATGTGAAGTTCTGGAGGCCACAGGTGCTGCTGATGGTGGCCAACCCTCGCTCTTCCTGCCAGCTCATCTGCTTTGTCAACCAGCTAAAGAAAGGAGGCCTCTTTGTGCTGGGCCATGTGCAGATCGGAGACCTGGATGTCTTGCCAACAGATCCTGTTCAGCAGCAATATAACTTCTGGTTGAGTCTGGTGGATAAGCTGGGTGTTAAAGCATTTGTAGATCTGACCCTCTCTCCTTCAGTCAGGCAGGGCACTCAGCATCTGCTGCGCATCACTGGACTGGGAGGAATGAAGCCAAACACGCTAGTCCTGGGCTTCTATGACAGCTGTTACCCAGAGGACTATTTCCTTCAGGATCCTACATTCTGTAAGGGTGCAGTGGATGGTGCCGGTTTTATTGGAGATGAGGGGGACAATTTTGGTGTGGACCTCCCGTCCCTACAGGCTCACTTTCCTCCTGTGCGTCATGCAGAGTGCCCCCGCTGGATTCAGCCAGATGAGTACGTGGGCATCATCTCAGATGCCATCAAAATGGGCAAGAACGTGTGCCTGGGCCGTTACTTCTTCCAGCTTCCGCCTGAAAGCAAAGGAAAAGGCGCAATGTCGACGAAAAGTGGAGATCATGCTGCTGACACGATTGACGTGTGGCCATCTAACCTGCTAAGCGTTGGTGGAAACCAAAGCTATGCCGATGTATGCAGCCTCTTCCTGCTGCAGATGGCATGCGTTTTAAACATGGCTGCAGGATGGCGCCGTGCTCGTCTGCGCATCTTCCTCTGTGTGGAATCGGAGTCTGGAGACCAGGGCTGGCTGGCCAAAGAGGAGCGCTTCAGGGAGCTGCTGGGGAAGCTGAGGATCCGTGCCACTATTAAGATTGTGCCATGGGATCCTGTGGTGCGGCTGCTGCGAGGAAGCGACAGAATCGCTCCCCCTGTGGTGACGGAGGAATTCCTGTGTGAAGTCAACAGGCTTCTGAAAGAACACAGCACTTCCGCTGCAGTGCGCTTCCTCTATTTGCCCTGCCCACCTGTCGATTCCAGCCAATCACAGCAGTACCTGGCACAGTTGGATACCCTTACTCAAGGTCTTGGTCCCACTCTTCTGATTCATGGGCTGACCCCTGTTACATGTACTGAGCTTTGAGCGAATTAAATGAAGTTACATATAAAGGGAAATCACTGTCAACCAAATGTTAGGCCAAATTTACTCAgaaaagacatgtttggtgtgtgacaCTTGCATCTTTAGTTTTGCAATGGAACTATGTGGCTAATGGAAGTCTGTCTTGGCTAATATATTTTATCTACTTGCTTTGATGTGTATTATTAGccatcaggtttttttttttctaaaataccAGGGACAtccatatttactaatttaagTGATCAGGTACATTGGTCTCATAACTGCACACCAAACAAAGTGCACACCAAACATGTCACAACTGTTTGACTATATTTGATGTAAGGGGGAAATTGTGTACTTGCAAAACTATCCCAacttaaacacacatgcagtgaCTTGTGCTTACTTAAAACTGCAGGTGTGTCTTACTGTGTGGGCAACTTATTTGTTCTCTGTCAACATATCTATTTGTTCTCTTCTTGATTTGcataagacatttatttaaagggATAAACTGAACCAAAAAGATATAATGGGTTTTGTGTGTCAATCACTGTTGCTACATAAAAGgggaacataaacatttaacaaCCTTTATTCAAGCACTTTCCTTCCATTTCAGAGCAAGATGATCTGAAGGATATTTAGGGAATGTGACGATTGAGCTGAAGGGAGAGTCCATGTGTGGTTTTGACTTGAACTTTAACATTCTGTAGTGATTTTTGTACAAATGGCACAGCCAGCTATCTTACTTAGACTTCTTTTCTTCCATTTATGCTTTACTTTAGAGTGTTATTGTGGAACTGCCTGAATTACTTTCCCAAAGCCTTGCAGACAGGTTTGTGTTAACACACTGCAGTCCTCACAGGAAGACTGATGGATACCTGGTCCCTCGGTGTTATCAGGCCAGTGCATTACTTCCCATTCCAAGTCTTTTTGTGTTCAACAGCTCCTTCCTGCAGTTTGACTgtcttaaaggaatactccagagTTTTTCAGCCCAATCTTTATCTGCACAAACAAACGTATATCAGCGCACTTCACTGTAATGATGAAAACAAGGGGGAACCTGGATGCTTGTTTACTTTTATCAGTAAACATGTTATAATCTAACCATACTGAGAAGGACATGACGGAAAGTCTTGTCAAAGCTTTACAACACTGCTTTGAGGTTTTCCTGCAAAACTCTTCACTACTTTGACCTCGTAGGTAAGGAATAACCCAGAATTCTTCCCACTGGTAAAGTAGTTTCATACGAACtttaaagagagagggaaaaaaaggaggtgagggaacagctgtttatagctgctataagtgataacaggaactaacttgttttgcagaagtTCAggaacaataaatgtaacta

Function

symbol description
slc12a9 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC12A9 (solute carrier family 12 member 9).

NR:

description
PREDICTED: solute carrier family 12 member 9-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K14429 SLC12A9, CCC6; solute carrier family 12 (potassium/chloride transporters), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921721.2 True 4498 mRNA 0.48 14 16008522 16020470

Neighbor

gene id symbol gene type direction distance location
LOC113531196 LOC108260025 coding upstream 1424 16003620 ~ 16007098 (+)
mink1 mink1 coding upstream 27100 15943731 ~ 15981422 (+)
pld2 LOC108260096,LOC108428962,LOC107734122,LOC107661209,LOC107596108,LOC107746406,LOC107663402 coding upstream 70321 15900741 ~ 15938201 (+)
chrne chrne,LOC108260097,LOC108428951,LOC107663376,LOC107599201,LOC106567876,LOC106603603 coding upstream 108777 15889985 ~ 15899745 (+)
atp1b2b LOC108260403,LOC108428936 coding upstream 127519 15862432 ~ 15881003 (+)
gucy2d LOC108259769,LOC108429017 coding downstream 20244 16040714 ~ 16056993 (+)
si:ch211-284e13.6 LOC108260434 coding downstream 37643 16058113 ~ 16063703 (+)
LOC113531220 NA coding downstream 46733 16067203 ~ 16069808 (+)
LOC113531178 NA coding downstream 88095 16108565 ~ 16118052 (+)
LOC113531200 NA coding downstream 100322 16120792 ~ 16131789 (+)
G387707 NA non-coding upstream 21480 15942086 ~ 15987042 (+)
G387704 NA non-coding upstream 67461 15938930 ~ 15941061 (+)
G387675 NA non-coding upstream 204599 15797594 ~ 15803923 (+)
G387659 NA non-coding upstream 237278 15771044 ~ 15771244 (+)
LOC117596225 NA non-coding upstream 276639 15723845 ~ 15731883 (+)
G387896 NA non-coding downstream 76895 16097365 ~ 16097567 (+)
G387933 NA non-coding downstream 121540 16142010 ~ 16142239 (+)
G387937 NA non-coding downstream 196567 16217037 ~ 16217667 (+)
G387938 NA non-coding downstream 197293 16217763 ~ 16218231 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding downstream 198295 16218765 ~ 16220819 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other upstream 148617 15807549 ~ 15859905 (+)
fkbp6 fkbp6 other upstream 641275 15361358 ~ 15367247 (+)
zgc:193711 LOC108260397 other upstream 647468 15354360 ~ 15361054 (+)
sik2a sik2 other upstream 734443 15245005 ~ 15274079 (+)
c27h11orf88 c28h11orf88 other upstream 774830 15163384 ~ 15233692 (+)
LOC113531248 NA other downstream 14353 16034823 ~ 16038605 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other downstream 56619 16077089 ~ 16096184 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other downstream 122472 16142942 ~ 16210315 (+)
trnam-cau_49 NA other downstream 127890 16148360 ~ 16148432 (+)
cdc42ep2 LOC108259851 other downstream 525640 16546110 ~ 16555546 (+)

Expression


Co-expression Network