klhl13 (klhl13,LOC108411535,LOC106603113,LOC107700252,LOC107693456)


Basic Information

Item Value
gene id klhl13
gene name klhl13,LOC108411535,LOC106603113,LOC107700252,LOC107693456
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16256294 ~ 16302749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921733.2
GTCCGGCTGGGGTCCATGAGTGGAGTAGATTTGAGGGGTTTAAGAAGAAAACAAGGGCAAACCCCGTCGCTAGAGAGGTGCGCTGTGGTTGAGTGCGCGGGAATGGACTACCCTGTGCATCGAGGGGACACCATGGCCTTGGGGCTGCACGACAGGTACTGTGCAATatctcTGGTGGAGGATGATGATGCTCatatgaaggtgtctcttggcTGTGGTGAGATGGGGCTCTCCGCCCACTTGCAGGCATCCAAGACGGGCAACACCCGCTTCTTCACAAGTAACACGCACAGCTCCGTCGTCCTacagGGTTTTGATCAGTTGAGGATAGAGGGGCTGCTGTGCGACGTCACGTTGGTGGCCGGCGACGGTGACGAGGCGTTTCCTGTCCACAGAGCCATGATGGCGTCATCCAGCGACTATTTCAAAGCCATGTTCacagGTGGGATGAAGGAGCAGGACCTGATGTGTATAAAGCTGCATGGCGTGAACCGCATCGGCCTGAAGAAGATCATCGACTTCATCTACACAGCCAAGCTCTCGCTCAACATGGAGAACCTGCAGGACACCCTGGAGGCGGCCAGCTTCCTGCAGATCCTCCCGGTGCTCGACTTCTGCAAAGTGTTCCTCATCTCCGGGGTGTCTCTGGAGAACTGCGTGGAGGTGGGGCGCATCGCTAGCGCTTACAACCTGGCCGAGGTGGACAAATACGTGAACAACTTCATCCTGAAGAACTTCCCGGCGCTCCTCGGGACGGGCGAGTTCGTGAAGCTTCCTGTGGagaggctagccttcgctctgTCCTCTAACGGTCTGCGGCGCTGCAGTGAGCTGGAGCTGTTTAAAGCGGCGTGCCGCTGGCTGCGGGCGGAGGACGGGCGCATGGAGCACGCGGCGCGCCTCATGCGCAACGTCCGCTTCCCGCTGATGAGCCCGAGCGAACTCATCAACCACGTGCAGACGGTGGACTTCATGCGCACGGACAACGCGTGCGTCAACCTGCTGCTGGAGGCCAGCAACTACCAGATGATGCCCTACATGCAGCCGGTGATGCAGTCCGAGCGCACGGCTATCCGCTCCGACAGCGCACACTTAGTGACTCTGGGTGGCGTCCTGCGCCAGCAGCTGGTCGTCAGTAAGGAACTGCGTCTGTTCGATGAGAAGGCGCACGAGTGGCGCGCACTTGCGCCGATGGACGCGCCTCGCTACCAACACGGCATCGCCGTCATCGGCAACTTCCTGTACGTCGTCGGAGGACAGAGCAACTACGATACCAAGGGGAAGACCGCAGTGGACACGGCGTTCCGCTACGACCCGCGCTACAACCGCTGGATGCAGGTGGCCTGCCTCAACGAGAAGAGGACCTTCTTCCATCTGAGCGCGCTCAAAGGCCACCTGTACGCCGTCGGAGGCAGGAACGCCGCTGGAGAGCTCGcAACGGTGGAGTGTTATAACCCCAGGACGAATGAGTGGACGTACGTGGCCAAGATGAACGAGCCACACTACGGTCACGCAGGAACGGTCTACGGAGGTTACATGTACATTTCAGGCGGCATTACACACGACACCTTCCAGAAGGAGCTGATGTGCTTCGACCCGGAGGCGGACCGGTGGACGCAGAAGGCCCCTATGACGACGGTGCGCGGGCTGCACTGCATGTGCACGGTGGGCGACCGGCTCTACGTAATTGGCGGCAACCACTTCCGCGGCACCAGCGACTACGACGACGTCCTGAGCTGCGAGTACTACAGCCCGGCGCTGGACGTGTGGACAGGCATTGCGGCCATGCTGCGCGGCCAGAGCGACGTGGGCGTGGCCGTGTTCGACAACAAGATTTATGTGGTGGGTGGCTACTCGTGGAACAACCGCTGCATGGTGGAGATCGTGCAGAAGTACGATCCGGACAAGGATGAGTGGCATAAAGTGTTTGACCTGCCCGAGTCGCTGGGGGGGATCCGGGCGTGCACGCTTACTGTGTACCCTCCAGACGAGCTGGCGCTGGCGGGGTCGCCCAGCCGAGAGTCACCCCTGTCCGCCCCTTGAAAACGGAGGGGgggagagatggaaagagagggagaaagacgctgaaacacagacacatggacGGCTCGAGGGACTTGCAGTTTGCTCGGTTTGCATCTCTCCCTCCGTggattctctttctttttctctccctctgtgtatctcactttctctttctccaggAAAAAATAGACAATGTTTGCACTTCGTCCCCGCTCCCAATTTTTGTCTGAGAAGTGTCTCTggtgaagccccgcccctttccctctcttccCCCCGCCCCACTTCTGCAATCTATGCTGAAGAACCCTCGTTCCTTTATCCCTTTATCCTTCACCTCCTCCCCTTCTTATTTTTGAGATGGGAAAGAAAAATTGGGACACCACCTCGGTTGGGCAACCTAATTATATCTtgatgttactttttttttattgttattattattatttgtttttactcCTCACCTTATTTGGCAGGAATAATCTTGACttgaaaaaaaa
>XM_026921734.2
GTCCGGCTGGGGTCCATGAGTGGAGTAGATTTGAGGGGTTTAAGAAGAAAACAAGGGCAAACCCCGTCGCTAGAGAGGTGCGCTGTGGTTGAGTGCGCGGGAATGGACTACCCTGTGCATCGAGGGGACACCATGGCCTTGGGGCTGCACGACAGatctcTGGTGGAGGATGATGATGCTCatatgaaggtgtctcttggcTGTGGTGAGATGGGGCTCTCCGCCCACTTGCAGGCATCCAAGACGGGCAACACCCGCTTCTTCACAAGTAACACGCACAGCTCCGTCGTCCTacagGGTTTTGATCAGTTGAGGATAGAGGGGCTGCTGTGCGACGTCACGTTGGTGGCCGGCGACGGTGACGAGGCGTTTCCTGTCCACAGAGCCATGATGGCGTCATCCAGCGACTATTTCAAAGCCATGTTCacagGTGGGATGAAGGAGCAGGACCTGATGTGTATAAAGCTGCATGGCGTGAACCGCATCGGCCTGAAGAAGATCATCGACTTCATCTACACAGCCAAGCTCTCGCTCAACATGGAGAACCTGCAGGACACCCTGGAGGCGGCCAGCTTCCTGCAGATCCTCCCGGTGCTCGACTTCTGCAAAGTGTTCCTCATCTCCGGGGTGTCTCTGGAGAACTGCGTGGAGGTGGGGCGCATCGCTAGCGCTTACAACCTGGCCGAGGTGGACAAATACGTGAACAACTTCATCCTGAAGAACTTCCCGGCGCTCCTCGGGACGGGCGAGTTCGTGAAGCTTCCTGTGGagaggctagccttcgctctgTCCTCTAACGGTCTGCGGCGCTGCAGTGAGCTGGAGCTGTTTAAAGCGGCGTGCCGCTGGCTGCGGGCGGAGGACGGGCGCATGGAGCACGCGGCGCGCCTCATGCGCAACGTCCGCTTCCCGCTGATGAGCCCGAGCGAACTCATCAACCACGTGCAGACGGTGGACTTCATGCGCACGGACAACGCGTGCGTCAACCTGCTGCTGGAGGCCAGCAACTACCAGATGATGCCCTACATGCAGCCGGTGATGCAGTCCGAGCGCACGGCTATCCGCTCCGACAGCGCACACTTAGTGACTCTGGGTGGCGTCCTGCGCCAGCAGCTGGTCGTCAGTAAGGAACTGCGTCTGTTCGATGAGAAGGCGCACGAGTGGCGCGCACTTGCGCCGATGGACGCGCCTCGCTACCAACACGGCATCGCCGTCATCGGCAACTTCCTGTACGTCGTCGGAGGACAGAGCAACTACGATACCAAGGGGAAGACCGCAGTGGACACGGCGTTCCGCTACGACCCGCGCTACAACCGCTGGATGCAGGTGGCCTGCCTCAACGAGAAGAGGACCTTCTTCCATCTGAGCGCGCTCAAAGGCCACCTGTACGCCGTCGGAGGCAGGAACGCCGCTGGAGAGCTCGcAACGGTGGAGTGTTATAACCCCAGGACGAATGAGTGGACGTACGTGGCCAAGATGAACGAGCCACACTACGGTCACGCAGGAACGGTCTACGGAGGTTACATGTACATTTCAGGCGGCATTACACACGACACCTTCCAGAAGGAGCTGATGTGCTTCGACCCGGAGGCGGACCGGTGGACGCAGAAGGCCCCTATGACGACGGTGCGCGGGCTGCACTGCATGTGCACGGTGGGCGACCGGCTCTACGTAATTGGCGGCAACCACTTCCGCGGCACCAGCGACTACGACGACGTCCTGAGCTGCGAGTACTACAGCCCGGCGCTGGACGTGTGGACAGGCATTGCGGCCATGCTGCGCGGCCAGAGCGACGTGGGCGTGGCCGTGTTCGACAACAAGATTTATGTGGTGGGTGGCTACTCGTGGAACAACCGCTGCATGGTGGAGATCGTGCAGAAGTACGATCCGGACAAGGATGAGTGGCATAAAGTGTTTGACCTGCCCGAGTCGCTGGGGGGGATCCGGGCGTGCACGCTTACTGTGTACCCTCCAGACGAGCTGGCGCTGGCGGGGTCGCCCAGCCGAGAGTCACCCCTGTCCGCCCCTTGA
>XM_026921735.2
CACATCCTCGCGCGCGCACTCGGCTGCAGCGCCGCTTCTCGGTACTCCTCCTGCGCGCTTTATGTTTCTTactatttgatttgatttttattgaacactattttctctttctcttctcatcGCTGTTCCGGGTGGACTCCTCTTCCTCAGGAGATGCTCGGGGTGTATggggtgggtttttttttgtcctgtgcGGAGCTACATGCTGCACGTTGGGCTAATCAGTAGCGCGCGCTGCTAAGATCAGAGCGGAGCCGCctcgcagcagcagcagcagcagcgcgtCAGTGTACCGACACCGTTTAccttcttcctcctccatctccatctcctcctcttcttcctcctcttctcccaCCTTCCTCTCGGCCCGGGCTCGGTGGGATGGAAGCCCTGGCCGGAAGCTTATTCGTGGTCCGGAGCTCGtgacacatttttcattttttatcatttttttccaccaaaacATGCCGCTGAAATGGAAAAGCGCTTCTCCCGTGAGCTGGAAATTCCCCGTGCCTGTGCTTAAAACCTCCCGCTCCTCTCCGTTATCACCGGCTTACATatctcTGGTGGAGGATGATGATGCTCatatgaaggtgtctcttggcTGTGGTGAGATGGGGCTCTCCGCCCACTTGCAGGCATCCAAGACGGGCAACACCCGCTTCTTCACAAGTAACACGCACAGCTCCGTCGTCCTacagGGTTTTGATCAGTTGAGGATAGAGGGGCTGCTGTGCGACGTCACGTTGGTGGCCGGCGACGGTGACGAGGCGTTTCCTGTCCACAGAGCCATGATGGCGTCATCCAGCGACTATTTCAAAGCCATGTTCacagGTGGGATGAAGGAGCAGGACCTGATGTGTATAAAGCTGCATGGCGTGAACCGCATCGGCCTGAAGAAGATCATCGACTTCATCTACACAGCCAAGCTCTCGCTCAACATGGAGAACCTGCAGGACACCCTGGAGGCGGCCAGCTTCCTGCAGATCCTCCCGGTGCTCGACTTCTGCAAAGTGTTCCTCATCTCCGGGGTGTCTCTGGAGAACTGCGTGGAGGTGGGGCGCATCGCTAGCGCTTACAACCTGGCCGAGGTGGACAAATACGTGAACAACTTCATCCTGAAGAACTTCCCGGCGCTCCTCGGGACGGGCGAGTTCGTGAAGCTTCCTGTGGagaggctagccttcgctctgTCCTCTAACGGTCTGCGGCGCTGCAGTGAGCTGGAGCTGTTTAAAGCGGCGTGCCGCTGGCTGCGGGCGGAGGACGGGCGCATGGAGCACGCGGCGCGCCTCATGCGCAACGTCCGCTTCCCGCTGATGAGCCCGAGCGAACTCATCAACCACGTGCAGACGGTGGACTTCATGCGCACGGACAACGCGTGCGTCAACCTGCTGCTGGAGGCCAGCAACTACCAGATGATGCCCTACATGCAGCCGGTGATGCAGTCCGAGCGCACGGCTATCCGCTCCGACAGCGCACACTTAGTGACTCTGGGTGGCGTCCTGCGCCAGCAGCTGGTCGTCAGTAAGGAACTGCGTCTGTTCGATGAGAAGGCGCACGAGTGGCGCGCACTTGCGCCGATGGACGCGCCTCGCTACCAACACGGCATCGCCGTCATCGGCAACTTCCTGTACGTCGTCGGAGGACAGAGCAACTACGATACCAAGGGGAAGACCGCAGTGGACACGGCGTTCCGCTACGACCCGCGCTACAACCGCTGGATGCAGGTGGCCTGCCTCAACGAGAAGAGGACCTTCTTCCATCTGAGCGCGCTCAAAGGCCACCTGTACGCCGTCGGAGGCAGGAACGCCGCTGGAGAGCTCGcAACGGTGGAGTGTTATAACCCCAGGACGAATGAGTGGACGTACGTGGCCAAGATGAACGAGCCACACTACGGTCACGCAGGAACGGTCTACGGAGGTTACATGTACATTTCAGGCGGCATTACACACGACACCTTCCAGAAGGAGCTGATGTGCTTCGACCCGGAGGCGGACCGGTGGACGCAGAAGGCCCCTATGACGACGGTGCGCGGGCTGCACTGCATGTGCACGGTGGGCGACCGGCTCTACGTAATTGGCGGCAACCACTTCCGCGGCACCAGCGACTACGACGACGTCCTGAGCTGCGAGTACTACAGCCCGGCGCTGGACGTGTGGACAGGCATTGCGGCCATGCTGCGCGGCCAGAGCGACGTGGGCGTGGCCGTGTTCGACAACAAGATTTATGTGGTGGGTGGCTACTCGTGGAACAACCGCTGCATGGTGGAGATCGTGCAGAAGTACGATCCGGACAAGGATGAGTGGCATAAAGTGTTTGACCTGCCCGAGTCGCTGGGGGGGATCCGGGCGTGCACGCTTACTGTGTACCCTCCAGACGAGCTGGCGCTGGCGGGGTCGCCCAGCCGAGAGTCACCCCTGTCCGCCCCTTGA

Function

symbol description
klhl13 Is expressed in olfactory bulb and telencephalon. Orthologous to several human genes including KLHL13 (kelch like family member 13).

NR:

description
PREDICTED: kelch-like protein 13 isoform X5

GO: NA

KEGG:

id description
K10447 KLHL9_13; kelch-like protein 9/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921733.2 True 2522 mRNA 0.57 8 16256294 16302749
XM_026921734.2 False 2031 mRNA 0.61 8 16256294 16302270
XM_026921735.2 False 2441 mRNA 0.59 7 16273924 16302270

Neighbor

gene id symbol gene type direction distance location
zgc:163098 zgc:163098,LOC108260249,LOC108411532,LOC107693453,LOC107746377,LOC107700249,LOC107710575 coding upstream 17143 16220974 ~ 16239151 (+)
LOC113531200 NA coding upstream 124505 16120792 ~ 16131789 (+)
LOC113531178 NA coding upstream 138242 16108565 ~ 16118052 (+)
LOC113531220 NA coding upstream 186486 16067203 ~ 16069808 (+)
si:ch211-284e13.6 LOC108260434 coding upstream 192591 16058113 ~ 16063703 (+)
LOC113531216 NA coding downstream 25399 16328148 ~ 16331254 (+)
si:ch1073-224n8.1 LOC108260430,LOC101076823,LOC103353299,LOC108245209,LOC103395553,LOC106516330 coding downstream 79721 16382470 ~ 16389670 (+)
ltbp3 ltbp3,LOC107665902,LOC107710572 coding downstream 92597 16395346 ~ 16443128 (+)
LOC113531476 LOC108259843,LOC107746380,LOC107596124,LOC558044,LOC108437058 coding downstream 151423 16454172 ~ 16528577 (+)
dpf2 dpf2,LOC107734150,LOC107596122,LOC106916658,LOC100692623 coding downstream 259461 16562210 ~ 16575004 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 35475 16218765 ~ 16220819 (+)
G387938 NA non-coding upstream 38063 16217763 ~ 16218231 (+)
G387937 NA non-coding upstream 38627 16217037 ~ 16217667 (+)
G387933 NA non-coding upstream 114055 16142010 ~ 16142239 (+)
G387896 NA non-coding upstream 158727 16097365 ~ 16097567 (+)
G387973 NA non-coding downstream 47292 16350041 ~ 16361001 (+)
G388145 NA non-coding downstream 146715 16449464 ~ 16449667 (+)
LOC113531478 NA non-coding downstream 366256 16669005 ~ 16670716 (+)
G388236 NA non-coding downstream 548639 16851388 ~ 16856409 (+)
G388276 NA non-coding downstream 696987 16999736 ~ 17002362 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 45979 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 107862 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 160110 16077089 ~ 16096184 (+)
LOC113531248 NA other upstream 217689 16034823 ~ 16038605 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other upstream 396389 15807549 ~ 15859905 (+)
cdc42ep2 LOC108259851 other downstream 243361 16546110 ~ 16555546 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other downstream 352920 16655669 ~ 16657113 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 975104 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 979240 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 1038669 17341418 ~ 17344855 (+)

Expression


Co-expression Network