ftr84 (LOC108259858,LOC108437047)


Basic Information

Item Value
gene id ftr84
gene name LOC108259858,LOC108437047
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16876564 ~ 16882312 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921743.2
ACAGGCACTGATCTTTGAGTCTCCCTCACACTACCActcttgttttttcctttctcttccttGCACTAGTTCCTGTAAACCATGGCAGACTCCTAtatgtgttgtctgtgtgctgatGCACTGCGGGACCCCATCACCATTCCTTGTGGAGATACATTTTGCCTGGAATGTATCAAGATCTACTGGGACCAGTTGGACCACCTGGGCGTCTATAATTGCCCAGAATGTCGGGCAACCTTCACTCCTCGTCCTGTCCTGCGCCGCAACGTGCCCAGTGTTGGTTCTCGTGAACGTCACTCACCCTTAACAGCATTAACACCCATTCCAGACCTCAAGAGGGACTCATTGTGTGATTTCTGCACTGGCCGAAGGAACCGGGCAGTCAAGTCATGCCTGGTGTGTCTGGCGTACTACTGTGAGACACACGTCAAGCCTCACTATGAGTCAGCCACGTTCAAGCGGCACAAGCTGGTAGATGAGATGGGGCACCTGGATCGTAAGATCTGCCCACAGCATGAGAAGAGCCTGGAGCTGTTCTGCAAATCGGATCAGATGTGTATTTGCGTTCTCTGTACAGTGAGGGAGCACCGTGGACACAACACGGTTAGTGCCGAGGACGAGCGTGCCGACAAGCAAAAAGTGCTGGTGGTGACCCAGGCCGAAGTCCAGCGTGTTATCCAGGAGCGTATGAAGGAACTACAGGACCTCAGACACAATGTGGATGTTCTCAAGGGTAATGCTCACCGTGCCCAAGCGGCCAGTGATAAGATCTTCAATGAGATGTTGCAATCTGTGGAGCGCTGGCATGCTGAGATTTGCCAGCTCATTCAGGCAAACCTGCAGGCTGCCATGGCACAGGCTGATAGCTATGTGGAGCGGCTGGAGCAGGAGATCATGGAGCTACAGCGGCGAGACACAGAGTTACGGCATATACTTGACACTGAGGACAACATATATTTTCTACAGAATTTTCCGTTGCTGTGCGTTGCCCCAGAGCCATTGGTGCCCAAAGTCCTGATCAACCAAGAGTTCTCCTTTAATGAGGTTACCAAAACGGTGACTGACATGAAGGAACACCTGGATGACATCTGCAAAAAAGAGCTGGACAACTTGTCCAAAAAAGTGACTGACATCCCGGTCTATGTGTTAATCCCCAGGACTGGTGGTCGGTTTAAAGatagTGTTTCCGCCACACCAACAAAAGCTGATCTTCAGGAGCCCAAAACTCGAGCGGACTTCCTCAGATATACAGTGAGACTTACCTTTGACCCCAATACGGCCTATAAAGAGTTGGCCCTGTCCGATGGGAACCGCAGGGTCGTTCGGAAACGCATGGTCCAGTTTTACCCAGAGCATCCAGACCGCTTTGATGGCTTTTGCCAGGTCTTGTGTGCTGAGCCTTTGAGTGGCTTACGTCAttactgggaggtggagtggagCGGCGAGTTCTCTGTTGGCGTCACCTACAAAAGCATCAGCCGCAAAGGCAAGAACTCGCACAGCCTCCTCGGCTATAACGACCGATCCTGGAGCCTACTGTGCTCCAACTCCGGATACTCGGCCTGGCACAACAAGACGGACAAAGATGTTCCGAGCATGCTCAGGGCCTCACGGATCGGCGTGTATCTCAATTACGCTGGTAATTCGGTGTCCTTCTACGCTGTCTCAGAAAACATGGAGCTCATCTACAGGTTCCAGGCCAAGTTCTCCGAGCCGCTATATGCTGGGTTTGGAGTCGGAGCCTCTGTAACGCTGTGCTCACCAGAGAAGATCACACAGCTGTACTCCTGAGGATAAGAGCAAGCTGAAACATGACTTGTCCTGCTTTCAACAGAGGCCAAGGACAAGGACAAGTTAATGTTCTTTGAATATTTAGGAGTTCTTAGCTGCCCAGTAGgcttctacttggaaccttctCATAAAAGACCACCCTGTTACAGGGTCCTCCATACCAGAAAAACTTAACAAGTCATTTCTTTCTATACTTACCTATACATATTAGCATGCTAATGAACTAGCATGCTTACTAGCCAGCCGACTAACATAATGGCATCATGTCATGTATAAGCAGGGGTGGAAGAAGTACTGAGAAATTGTACTTTAGTGGAtgtatagataatgtgtcaaaatcttacttttaaatgtattcaagtattaaaacataaaagagGAAACCATCATTCAGTCACTGTACAATTGCTGCTCATATGCTTGACTGATGCTACGTAGTTTGCTAATCAATGAATCTGAAGTAAAATATCTTGTAAATATCTAACAtctaccattagctagaatttgacttgctgcctagccagGTACTGCAATTGATGCTAGTCAAGTCAATAACCTGGCGTTAGCAAAGACAGCAAGTTAAATATAGGCAGTtaacattagcaaattagcaaagcATACCTTTTTAAAATTACCTGAACTTCATGTCTTCGAGGGAGGTAAAGGAGACGCCTCATTTTATACGAGTCTTTGTTTACTCCAGCAgattgaaatgttttactgagGTAGGTCCAGGGGCGCTCATCCTCAAATTCAACACTGCAGTCCAGTGGAGCAAACATATTCAGACACACGGATAGCTATCAAGCTAACTACACTGTAGCAGGAGAAGGTCACAGCAGATGATGATAATACAATAATGCTCAAGTGAAGtataaatacaacaaaataatacttaagtatagttaaagtacaattactcaagtagtttCCACCCTGTTTATAAATGGAGTAATGtagttattaatatatttaacatgttCTTTTGTAgctttttgatattttgaataaatacatacaatctgtaacaattaaataatatatcCAAAC

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921743.2 True 2841 mRNA 0.46 9 16876564 16882312

Neighbor

gene id symbol gene type direction distance location
LOC113531226 NA coding upstream 26253 16846292 ~ 16850311 (+)
LOC113531227 NA coding upstream 31009 16843048 ~ 16845555 (+)
apoa1a apoa4 coding upstream 44615 16829982 ~ 16831949 (+)
pafah1b2 pafah1b2,LOC108437041,LOC107734127,LOC107599209,LOC107661198,LOC107746392 coding upstream 49355 16821301 ~ 16827209 (+)
tmprss4b LOC108259861 coding upstream 87663 16782749 ~ 16788901 (+)
LOC113531215 NA coding downstream 51370 16933682 ~ 16939819 (+)
h3f3c h3f3b,H3F3A,LOC105909691,LOC107572204,LOC107388308,LOC101073377,LOC105891059 coding downstream 62284 16944596 ~ 16950045 (+)
kptn kptn coding downstream 94177 16976489 ~ 16981615 (+)
hnrnpl LOC108260116,LOC108437052,LOC103047348 coding downstream 99884 16982196 ~ 16993865 (+)
ckma ckma,LOC100304493,LOC108444028,LOC103045415,LOC107548480 coding downstream 182589 17064901 ~ 17069817 (+)
G388236 NA non-coding upstream 20155 16851388 ~ 16856409 (+)
LOC113531478 NA non-coding upstream 205848 16669005 ~ 16670716 (+)
G388145 NA non-coding upstream 426897 16449464 ~ 16449667 (+)
G387973 NA non-coding upstream 515563 16350041 ~ 16361001 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 655745 16218765 ~ 16220819 (+)
G388276 NA non-coding downstream 117424 16999736 ~ 17002362 (+)
G388463 NA non-coding downstream 153147 17035459 ~ 17036456 (+)
G388468 NA non-coding downstream 165091 17047403 ~ 17057491 (+)
G388514 NA non-coding downstream 288141 17170453 ~ 17170679 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding downstream 312012 17194324 ~ 17202617 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other upstream 219451 16655669 ~ 16657113 (+)
cdc42ep2 LOC108259851 other upstream 321018 16546110 ~ 16555546 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 666249 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 728132 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 780380 16077089 ~ 16096184 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 395541 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 399677 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 459106 17341418 ~ 17344855 (+)
radx LOC108259901 other downstream 508554 17390866 ~ 17412842 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 573182 17455494 ~ 17461069 (+)

Expression


Co-expression Network