LOC113531216


Basic Information

Item Value
gene id LOC113531216
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16328148 ~ 16331254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921790.2
AAATAAGAAGGCGATTGTTGGGGAGTTGGAGATGATTATAAAGGctggaatgagagagagacagattcaccacacatacacacacaggaacaggaacagaaGTTGCAGAAGATTGCCTGGACTTATAATCACATAGACACCATGTTGAGAAAGCATCCTGCTCCTCCACTCCTTCTCTCCATCACCTTACTCATCTCCTCCATATTagcatcgtcatcatcatcaccaccacacaATGCCACCCACCATCCCGGCGTTCCCAATCCGCATTTTTTCAGTCCCGGTGAAGACTACAATGATTACAATGAGGAATTAACTACAGAAACGACACACAAAACCATGGGTTCTCCGCCTCCGCCCTGCGAGTACGACTCCTGCAAAGACCAGCAGGAGTCGTGTCAGAAGCTCGCACTCACTCTGTCCTGTTCCTGCCCCGGTATCAGCGGCCCCTTTGAACTTCCGGACACTCCAACCCTCTGGAGGCTGTCTTTAGAACCCAGTGGAATGGTGGTAGTACGGTGGTGCGCGCCATCCTCCACGGTCACGCACTACCTCGTTCAGGTGGAGGGTCAGGATGAGGCGCGTGATGCGAGAGAGAATAGGAGGATGATGGAGCTGGGAGATATAGCTCCTGGCACTGAGGTGTGCGTGGAGGCGGTGAACAAGGCAGGCGTCAGCACCCGGACGAGCTCCTCGTGCGCTCGCTTCGAGAGCTCCGAGACGACGTTCACCGTCAAGTTGGTGCTCGTCGGAGCAGCAGTGGTGTTGGTGGTAGTGATCGTGTCAGCGCTGTTGCTCTGGTGGTGCAGGAGACACCGGAAAACTCCAACACGGACAGCAAACCGAGGAACCGACATGGTTCTCTGAGGGAGAGGAAGAACAAAGCAGGAGATCTTTAATAACTGTTGCTTGAAAGATTTTTACTGGAATGTCTATGTGTACAAAAGCACTTTAGTTACAGTATTGTTTGAGTATTAattgtatgtgatttttttttgtggatttctactgctactattattattattattattttaatatatatatttctttttgtgGAAGTATTTTATCTTGAAGTTTTATGCTACCTTTGTGCGTAAGAGAGAAGTGAATTGATGATGATttaacagatatatatatatatatattcaatttttTCCAACCTATGTAGTGAAAACCAGCTCCCATGAATGTACTCATCTGCGCACAACGCTTGTCCTTGCTGAAAACTCTGCGCTCATGTTTACAATACAGCTGGAAACTTTAAACTCTTTCCCCGCTGAGGTTCTGCCATCAGTCATAAAACACTTAGCTTGTTTTTCCCTATAACAATATGaccctctgattggctggagtGTGACCGATCAGAGCCAAAGGgttcagaacaaaaaaaacagatcagcgTGAGCAATGCACGATCATCAACCATTGCAATTGCAGTGAGCACATTACATATGGTAGCCTTTAGGGGGCAGAGCTGAACAGCTTGGTTCTGAGTCTGGGTCTAAAAAGGACACAAAAATTGCCtaatacatttcatattatGAATCACGGTTCTTTATGtgccacagcgctgttgaattctcgattctgattggtcagatggtggtGATTAGttgtctgtaaggagatgtttatttaacatttatggaaggagtctccagtgtcagcgctttgtaagact

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921790.2 True 1684 mRNA 0.46 2 16328148 16331254

Neighbor

gene id symbol gene type direction distance location
klhl13 klhl13,LOC108411535,LOC106603113,LOC107700252,LOC107693456 coding upstream 25399 16256294 ~ 16302749 (+)
zgc:163098 zgc:163098,LOC108260249,LOC108411532,LOC107693453,LOC107746377,LOC107700249,LOC107710575 coding upstream 88997 16220974 ~ 16239151 (+)
LOC113531200 NA coding upstream 196359 16120792 ~ 16131789 (+)
LOC113531178 NA coding upstream 210096 16108565 ~ 16118052 (+)
LOC113531220 NA coding upstream 258340 16067203 ~ 16069808 (+)
si:ch1073-224n8.1 LOC108260430,LOC101076823,LOC103353299,LOC108245209,LOC103395553,LOC106516330 coding downstream 51216 16382470 ~ 16389670 (+)
ltbp3 ltbp3,LOC107665902,LOC107710572 coding downstream 64092 16395346 ~ 16443128 (+)
LOC113531476 LOC108259843,LOC107746380,LOC107596124,LOC558044,LOC108437058 coding downstream 122918 16454172 ~ 16528577 (+)
dpf2 dpf2,LOC107734150,LOC107596122,LOC106916658,LOC100692623 coding downstream 230956 16562210 ~ 16575004 (+)
myo1ca LOC108437060,LOC107746384,LOC107548455,LOC107663411 coding downstream 262172 16593426 ~ 16623299 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 107329 16218765 ~ 16220819 (+)
G387938 NA non-coding upstream 109917 16217763 ~ 16218231 (+)
G387937 NA non-coding upstream 110481 16217037 ~ 16217667 (+)
G387933 NA non-coding upstream 185909 16142010 ~ 16142239 (+)
G387896 NA non-coding upstream 230581 16097365 ~ 16097567 (+)
G387973 NA non-coding downstream 18787 16350041 ~ 16361001 (+)
G388145 NA non-coding downstream 118210 16449464 ~ 16449667 (+)
LOC113531478 NA non-coding downstream 337751 16669005 ~ 16670716 (+)
G388236 NA non-coding downstream 520134 16851388 ~ 16856409 (+)
G388276 NA non-coding downstream 668482 16999736 ~ 17002362 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 117833 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 179716 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 231964 16077089 ~ 16096184 (+)
LOC113531248 NA other upstream 289543 16034823 ~ 16038605 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other upstream 468243 15807549 ~ 15859905 (+)
cdc42ep2 LOC108259851 other downstream 214856 16546110 ~ 16555546 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other downstream 324415 16655669 ~ 16657113 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 946599 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 950735 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 1010164 17341418 ~ 17344855 (+)

Expression


Co-expression Network