LOC113531227


Basic Information

Item Value
gene id LOC113531227
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16843048 ~ 16845555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921805.2
GAACCGACTCTCCAATATGGGAGACAGCAGACACACAGGCTGAGAGTCTGAGCTGGAGAAGGAGTGAGAGATGAAGGCAGGTGTCGTTCTCGCTCTGGTGTTTCTGCTGTGCAACAGCAGCCTTCAGGATGCCGAGACTCCTGACCCGAAATTTGACGTCAACCAAGAAATCATCCAGCTGCACGACAGGGTCACACGGCTGAAAGAGGACCTGAAGGTCATGGAGAAAAATAACGCAGCTTTAAGGATGAGATTGGCAGCTGCTAATCTGGAACTGAAAAACCTGAAAGAACCGCCGAAGATTGCCTTCTCGGCCGCTCTGACTCATCCTGTGGGACACTACAATGTTGATATTACTCTGGTCTACACTAAAGTCATCACTAACGTTGGACGAGCCTACAACCCAGTTACAGGGATTTTCACTGCGCCACTAAACGGAAGCTACTACATCAGGTTCACGAGCTGTGATAACACCGACAGTCACGGCATGGCTGTAGATCTGTATAAGAACAACGAAAAGATGAATGGTTTATCGAAATACAGTAATGGCTTCATGACGTATTTCTCTGGTGGTCTCGTCATTCAGCTGGAGGCAGGAGACGTCGTTTACACCAAACTCCCCGCCAACTCGAAGCTTTACGACGACGCGAATAATCGCACCACTTTCAGCGGCTTCCTCATCTTCCCCATGTGAGAGACGGCTATGGGAACACAACTCAGCTGTGGATTCTACACTGTACTTTGAAACTTATGTCTTTGAGAATGTTTTCTATGAGCAgaataataaatctgaaaatgttcctgaca

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921805.2 True 807 mRNA 0.48 4 16843048 16845555

Neighbor

gene id symbol gene type direction distance location
apoa1a apoa4 coding upstream 11099 16829982 ~ 16831949 (+)
pafah1b2 pafah1b2,LOC108437041,LOC107734127,LOC107599209,LOC107661198,LOC107746392 coding upstream 15839 16821301 ~ 16827209 (+)
tmprss4b LOC108259861 coding upstream 54147 16782749 ~ 16788901 (+)
panx1b LOC108437068 coding upstream 188560 16648367 ~ 16654488 (+)
epd NA coding upstream 195627 16643263 ~ 16647421 (+)
LOC113531226 NA coding downstream 737 16846292 ~ 16850311 (+)
ftr84 LOC108259858,LOC108437047 coding downstream 31009 16876564 ~ 16882312 (+)
LOC113531215 NA coding downstream 88127 16933682 ~ 16939819 (+)
h3f3c h3f3b,H3F3A,LOC105909691,LOC107572204,LOC107388308,LOC101073377,LOC105891059 coding downstream 99041 16944596 ~ 16950045 (+)
kptn kptn coding downstream 130934 16976489 ~ 16981615 (+)
LOC113531478 NA non-coding upstream 172332 16669005 ~ 16670716 (+)
G388145 NA non-coding upstream 393381 16449464 ~ 16449667 (+)
G387973 NA non-coding upstream 482047 16350041 ~ 16361001 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 622229 16218765 ~ 16220819 (+)
G387938 NA non-coding upstream 624817 16217763 ~ 16218231 (+)
G388236 NA non-coding downstream 5833 16851388 ~ 16856409 (+)
G388276 NA non-coding downstream 154181 16999736 ~ 17002362 (+)
G388463 NA non-coding downstream 189904 17035459 ~ 17036456 (+)
G388468 NA non-coding downstream 201848 17047403 ~ 17057491 (+)
G388514 NA non-coding downstream 324898 17170453 ~ 17170679 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other upstream 185935 16655669 ~ 16657113 (+)
cdc42ep2 LOC108259851 other upstream 287502 16546110 ~ 16555546 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 632733 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 694616 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 746864 16077089 ~ 16096184 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 432298 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 436434 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 495863 17341418 ~ 17344855 (+)
radx LOC108259901 other downstream 545311 17390866 ~ 17412842 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 609939 17455494 ~ 17461069 (+)

Expression


Co-expression Network