adamts8a (LOC108259710,LOC107598150)


Basic Information

Item Value
gene id adamts8a
gene name LOC108259710,LOC107598150
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8778274 ~ 8793835 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921836.2
GAGTGTATAAATACCGCCGACAAGGACGCGTACACACTGAGTGTACACAGGTCGAAGAGCGTTTCCCTTAATGGCGACCTCATGTTCAAAAGTGTCACTTTGTTCTTTTCTGTGAATGGAAACGGGCCGTTTGTTTCAACTCAAGCCGGTGATTTCATCCAGTTTCATCAAGTGCAATTTCTGtagtttgttgttgttaaaatcttttgcatttatatttgaaCGTAAGTAGCGAGATAAGTTCTTGTATTTTATGTACAGTTTTTATAACAATATTTGCGTAGCACCAGTCACCATGATTTTCACCGCACATTTAATCTTGACCACTGTTTTGTTCGCTGGACTTGTGAAATGTAATAGCGTAGCTTTGGACGAGACCGAAACAGTACCTGTCAAAGTTTCTTTAAAGAGAAATGGCTTTTGGCGATCTGAGGACTGGCATGTTTTCCAAATTAAGGCGTTCGGGCAAGTTTTCACGCTGAACCTGAGGCCGGACGACAGTTTCATGGCTCCTACGTTACACGTTCAGCGCGTAAAAGGGAAACATCTCTCGGCTGTTGCGAACGGCTCCGGGCATGAGCGCGTCCTCGAGGATATACTGCTTGAGCCCAGAGAAAGCGAGCAGGAGCTCAGGGGCTGTTTCCACACGGGTACAGTAAATAAGGACGAGGAGTCGCTGGTCTCCGTCAGTCTCTGCCGTGGCATCCGGGGAACTTTCGTAACGCGCGGTCGAGAGTACTTCATCGAACCAGTCGGTGCGCGCACTGGAGACGCGAGGCGGACTTTCTCTCAGCCTCACGTCGTTAAAAGGCGAGTGTTTTCCAGAAAGTTCGGCGTcaagggagaggaagaggacaACAGTTATGTGAAGCATGGTATAGATCAGTCGAACGAATATGAACAAAAAGCGCAAAAGCGGGAGCGGAGGTTTGTTTCAGCAGCCAGGTACATCGAGACCCTGGTTGTGGCGGACGCTTCCATGACGCGTTTCTATGGAGACGAGATCAAGCACTACCTATTAACCATAATGGGGATGGCCGCACAACTTTTTGGCCACCCTAGCATTAAGAATGCAGTGAGCCTAGTGGTGGTCAAGATGTTGGtggtggaggatgaggatgttGGACCTGAGGTGTCCAGAAATGGTGGAATGGCCCTACGCAACTTCTGCACCTGGCAACAGCTCTTTAACCCAGCAAGTCCACGCCACCCTGAGCATTACGATACAGCCATTTTGTTCACTAGGGAGGATATTTGTGGACATCAGCATTGTGACACCCTTGGTGTAGCTGATGTAGGAACCATGTGTGACCCCAAAAGAAGCTGTTCAGTCATTGAGGACAACGGCCTTCAGGCAGCCTTCACTGTGTCACATGAGCTCGGCCATGTACTAAGCATGCCGCACGATGACTCCAAAACCTGTGAGAAATTGTTCGGTGATATTGATGGACACCACCTAATGGCTCCCTTCTTTGTCCACCTCAACAAGACACTTCCCTGGTCACCATGCAGTGCTCTTTACATCACAGAGTTCTTCGACAATGGGCATGGTGACTGCTTACTGGACATGCCAGACCAGACTATTCCCTTAAGGGCTGAGCCTCCGGGCCACATGTTTGGTCTGGACCGTCAGTGCCAGCAAGCATTCGGGGAGGAGTTTACGCGCTGCCCCAATGCCCCGGAGGACCAAGCCTGCATCCAGTTATGGTGCCGTGAAGAGGGCAAACTACAGTGCACTACCCGTAATGGGAGCCTGCCCTGGGCCGATGGCACACCCTGTGGTGAAGACCAGAGCTGccgtgggggtgtgtgtgtgtcaagcaTATTGGcagagaaggaagagaagGAACCAGTCAATGGTGGCTGGGGTGCATGGGGCCCCTGGGGTCCATGCTCTCGGACTTGTGGCGGTGGGGTTGAGTTTTCCCATCGTGAGTGCACAGATCCAATGCCACAGAATGGAGGATCCTACTGCGTGGGTCAGAGAGTGAAATACCAGTCCTGCAACATTCAGACCTGCCCAGGAAATCATGGTAAGAGCTTCAGAGAGGAACAGTGTGAGAAATACAACAGTGATCGTTACTTGAACATACATGGCAAAATAAAGCAGTGGATCCCAAAGTATGCTGGTGTTTCGCCCAGGGATCGGTGCAAACTTTTCTGCAGAGCCAAGCACAGCAATGAATTTAAAGTCTTTGAAGCCAAGGTCGTGGATGGTACAACCTGTGGTCCAGACACCACGTCTATCTGTGTCCAGGGACAATGCATCAAGGCTGGCTGTGACCAGGTCATAGGCTCCAATCTTAGGCTTGACAAGTGTGGTGTCTGTGGTGGAGATGGCACAAGTTGCAGAAAAATCAGTGGCACTCTAAACAAAGCTACATTTGGATACAATGACATAATTACAATTCCTGCTGGGGCCACCAACATTGACGTCAAGCAGCGTAGCCACCATGGCATCAAGCATGATGGTAACTACCTGGCAGTGAAGGCCGAGGATGAAACCTACATTCTTAATGGGAATTTCTCAGTATCCACGGCTGAACAGGACATTCCAGTGCGTGGTGCTGTCCTTCGATACAGTGGCTCATCCACTACCCTGGAGCGGCTTCTCAGCTTCCAGGTACTCCAGCAAACCATTACCATCCAGCTTCTGTCAACAGCAGGTGACAGCTCACCACCCAGGGTTAAATATACCTTCTACCTTCCCCGGGATCTTCCCTTCAGCAAGCCAGACGCAGAGAAGAGCCTCTCCCCACATGTCATTTTGCCGTTTGGAGGAGCCGAATGGGTCCTGGGGGAGTGGTCCGAGTGCTCTAAGAGCTGTGGTGCTGGCTGGTCCAGGAGGAGTGTCGAGTGTCAGGACAGAACAGGAGCCCCATCTTTCTTGTGCGACATGGAGCTACGGCCAACCGACATCCGACCGTGTGGTGATCTGCCCTGTCCTGTATGGCAGATGGGACAATGGTCAGCCTGCTCTCGGACTTGTGGTGCCGGTGAGCGCCGGCGCAGCGTGCTGTGCATAGACTACACAGGCAAGACCGTGGAACCAGAGAAGTGCGACCCAGATAAGCAGCCGGAGGCTGTTTCCACAGAGTGCTTTTACCAAGACTGTTAAAACTTTTCCCTGTATCAAAGAACAGGGGCAGGTGGTGGCAGAGGTTTAAGATCCATAGGGCAGGTAGTGGATGAGAGAGCTATTAACCTAACACTCTCCCTTTAAAATAGGAAGCTGACCATGCTTCAGAAGCAAGCTAGgaaattttaacataaaaaatggGTACAGAAATCACCTGTCAAGCGTAATAATGGCATTAGATTATGAGGTTTCATCTATATGATTAATTCTCATTGTtattcatattctttttttaacttttaatcaTCTAACCACAATTGAATATACTTTCCTGCCCCACTGAGATCTACCTCAAACCATAAAAATGTTGTAATACTAAAGGAGAGAATTCTGTTTTAAACTTTACTACAAAGGAATATCACCTTTGCAAAAAAACCTGCtgaattttattcaaatatgaCTGGTCAAATACCtccattttaatgcatttcagtCCACAGTAGACTGATAGATTATCTAACTGAGTCAAAATTTAAAGCTACCTGAGACATGAACACACCAGCTTCACAAGTAGGAGTGTTCCTCTCTTTAGGCTTAGTCCACATCCAACTGCCTTTTTTTAGTAGTTAATTCTTCATACACATGCTTATGCTCTATTTcacatgtttaatttatttgccAGTTTGTATTCTATAacaatgtgtttattaattaacactCCTCATAATTTAACGCTGGGTAATATGATAGGAAATACTTACAAGATTTACATATTTCAACACTGGAATTTAGTACAGTCCTTAGCCACATAGGGATAAACAGACATCATCTAGGCCAATGTGAGAGCTATTGAATAGTGAGGGCATTTAACTTCTTAGTATCTGCTTTTAACATTTGTctgctttctttttaaattatcgAGCTGCTTTCTAGTTTGTCACAGTGAACTTGCTCAATCTAGATGATAAACTCTGTTTTGTATTATAGCCAGGCCATCATACTGTTTGAACAACTGTTAAGATATGGCGTCAATCTTTTCTAAAGCCACTTTTTACTATGTGTTTTCTAAACCATCCGTTGttacacaaaacatacaaacaaatgtATACATCATCGAAATGCAAATCCCTCTGGAGAAAAGTATTTTTCATATTGTAATGCCTGGGAAttagttttaaagaaaaatctgaGACTGGTCCTACAAGGTAGAGTAGAGCAAAGAGAGTGATGATCTAGCTCAACTGACTAAAAGGCTCTTTTTCAGGAATAGGtaaaatcattccagatttttGAGCtgaaaataatgattattagaAAAACAGTCAAGTCAACAAGAGAcagtatatattaaattatacaacagtttgaTTGACAAGTGGCATTCCAATAGTATAACCACACTtttgtatcactccgcttgtctgtgttcactacataaaattccaattctagcaaatAGTTTGTTACATTGAACCGTTACTACTCTTAATacgggctgtcagtcagtctgtccgTTACATGGCAACACGCACCACTCTATctagctgtggcttctttgggaactattttcattgacaaaacaaaaataaacaaaatatttggccatattttgtctgaaatgtcagttactcgatattaatttcttgtttatagaactgttgtataaaagcaatattacaCTCGCAAccatgctgttgtactgaatatctgCATGACTGTGATTACCTGCAGCCAAATCACAgcagtgctgatattcagtacaacttTCTTGCTCATGGGATATTGCTTAAATGTTTGCCTCTCTTTGCTCAGGCccaaaagaaaaactaaaacaacTGCATAAAACCCTAATATAAATGTGTTAGTCCAAAGATTTGCATTCCTTCTGAATGAGATGTTCTGAAATTATGTAGATCTGAAACTAGACCATTCTATCCCTTCAGTGAAGGTCTGTATGATGCTATTGTTATAGCTTCCTTTTTaaggtatttattttttctaactTAAAACACCcaagttgtgttttatttcttgttgcTGTTGTCTGTCCTATATAACTGATATGAACTgaaatcattaattaaatgtGTCTGAACATG

Function

NR:

description
A disintegrin and metalloproteinase with thrombospondin motifs 8-like

GO: NA

KEGG:

id description
K08623 ADAMTS8; a disintegrin and metalloproteinase with thrombospondin motifs 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921836.2 True 5178 mRNA 0.44 9 8778274 8793835

Neighbor

gene id symbol gene type direction distance location
phldb1a LOC108260305 coding upstream 227740 8495718 ~ 8550534 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding upstream 283924 8481772 ~ 8494350 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding upstream 311267 8466346 ~ 8467007 (+)
c2cd2l c2cd2l coding upstream 313078 8419814 ~ 8465196 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding upstream 445945 8328176 ~ 8332329 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding downstream 249 8794084 ~ 8808883 (+)
LOC113531529 bco2,LOC108260375 coding downstream 47662 8841497 ~ 8866506 (+)
LOC113531654 bco2,LOC108260375 coding downstream 74462 8868297 ~ 8885127 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding downstream 338054 9131889 ~ 9154326 (+)
tecta tecta,LOC107665015,LOC106603728 coding downstream 365193 9159028 ~ 9185282 (+)
G383609 NA non-coding upstream 40200 8737873 ~ 8738074 (+)
LOC117596219 NA non-coding upstream 162919 8614303 ~ 8615355 (+)
G383448 NA non-coding upstream 221431 8554596 ~ 8556843 (+)
G383443 NA non-coding upstream 269892 8507216 ~ 8508382 (+)
G383399 NA non-coding upstream 393771 8384245 ~ 8384503 (+)
LOC113531289 NA non-coding downstream 156957 8950792 ~ 8953176 (+)
LOC113531287 NA non-coding downstream 160312 8954147 ~ 8964359 (+)
G383849 NA non-coding downstream 330588 9124423 ~ 9124758 (+)
G383911 NA non-coding downstream 398630 9192465 ~ 9192780 (+)
G383947 NA non-coding downstream 518530 9312365 ~ 9314081 (+)
G383625 LOC108260351 other upstream 3140 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 185893 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 213017 8558826 ~ 8565257 (+)
G383217 NA other upstream 565167 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 617017 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 971905 9765740 ~ 9768036 (+)
G384593 NA other downstream 1584378 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 2504139 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2924183 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3997066 12790901 ~ 12800917 (+)

Expression


Co-expression Network