LOC113531298 (myo19,LOC107591502)


Basic Information

Item Value
gene id LOC113531298
gene name myo19,LOC107591502
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6633970 ~ 6653902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921928.2
CGGAACGCGAGTAGGAAAAGCGTTCAGTTAGGCGGGGAAGAAATTTTGTCCTTCACAGTGGAATTTTCTGACTCAGAAGCAGGAAAGTGGAAGAGCGGTGTGTTAATGGCGGGGCTGTGAGACTAGGAACCGCTGAAAACGGGCTTTCTGGACAGTCCTGCCTCTTTGTACTATGGCAAATGTCAAGCAGAAGCTTTCATTCAGGACTGAAAAGGTGTCTCGAGACAGAACAGATGCTGAATCTGTGAGTTTTGAACTCACGAGACGTCCTGGGAAGgtaaacagagagacagagcggcTCCAAGCCCGCAGAAAGTCTCTCAATGACTCACTAGAAGGAGACATCAGAAATTTTCTAGTAAACGAGGCTGAACTCCACACCTATGATGACCTGACCAAAGTCAACCCTGTAACCCCAaccacagTGCTAAAATGCCTGCAGGCACGTTACAGTGCgaaagtgttttacacacacgcCGGCTGCACGCTGGTGGCACTGAACCCCTTCCAGCCCATTCCTCACCTTTACTCGCTGGACGTGATGCGCGAGTATCACTCAGCTTCCCAACCTCAGgaCTTTAAGCCGCACATCTTTATCGTAGCCGAAGAGGCATACAGGAACGTTCAGGGCCAAGTCGAACCTGTCAACCaatcactagtggtctcagggGAGAGCGGAGCTGGGAAGACGTGGACGTCACGCTGCCTCATGAAGTACTACGCCACAGTGGCTACCTCGTCACAGAAGTGCCAGCACACGGTGGAGTGGATAGAGAGACGAGTGCTGGACTCGAACCCCATCATGGAAGCCtttgGCAATGCTTGCACTTTAcgcaacagcaacagcagccgCTTTGGAAAGTACATCCAGCTCCAGCTGAACAGTTCTCAGTTGCTGGTGGGGGCCTCGGTGCAAACGTATCTCCTAGAGAAGACCAGGGTGGCCTTTCAAGCACCGAATGAGAGGAATTTCCACATATTTTACCAGATGATGAAGGGGGCCACAGAAGAACAGAGGCAGGAGTGGGAGATGCCACGTGACCAGAAGTTTGCCTGGTTGCCAAATGCAGAGAAAACCTTAGAAGAGGATTGCTTCCAGGAGACGGTTGAAGCCATGGTCAGCCTTGGCATTGACGCAGACAAGCGTGCACAGATTTTCAGGATCCTGGCAGGTCTTCTGCAGCTGGGGAATGTGAACTTCAGTCCTGGCCCTGAGTCTGAGCCCTGTGGCCTCGATCACCAGTCCAAAggtttccTAGAGAAGACAGCGGCTCTGTTGCGTGTGCCAGCAGATGAgctgcaggagtgtgtgagcgtACGGATGCTGCGTGCAGGAAAGCAGAGCGCCCTGCTGAAGCCCTGTTCACAGAGCGAGTGTGCTGTGCGCAGGGACTGTCTCGCTAAAGTCATCTACGCACGACTGTTTGATTGGTTGGTCGGCTTCATCAACAGCAGCATGTGCGCAGACGACTCCATGTGGTGCAACTTCATTGGCCTTTTGGATGTGTATGGCTTTGAGTGTTTCCTGCTGAACAACCTGGAGCAGTTGTGCATTAACTACGCCAATGAGAAGCTGCAGCAGCACTTTGTAGCTCACTATCTGAAAGCCCAGCAGGAGGATTACGTGTCTGAGGGACTGCAGTGGTCTTTCATCCGCTACCAAGACAACCAGAGCTGCCTGGATTTGATTGAGGGAAATCCCACCAGCATCTTCTCTCTGCTTAATGAGgAGTGCCGTCTGAACAGAGCCTCCGATGCTAAGCAGTTCCGGGAGCGTCTGGAGAAGGAGCTCTCTGACAACGGCAGTATGAGCTGGGACAAGTTTAGCAAACAGCCTCACTTCATTGTGGCTCACTATGCAGGCAAAGTTAGCTACCAGATCGAGGGCATGATGGAGAAGAATAAGGATCCAGTCCCCCCTGAACTCCTCAGCTTGCTGCAAAAGTCGGAGGATCCTCTGCTGCAGAGTCTCTTTGCAGACTCAGACACTGAAGGAAACCCTCGTGGCCACAGCAAAGTCGTCACTGTCGTCTCCAAATTCAGGAACTCCTTGCAGAATTTGATGAAGATTCTGCACAGCACCACTCCTCATTACACACGCTGTATTAAACCCAACCCCGACTGCAAGCCGCTTACCTTCAAGAAGGAGGAGGTCATCACACAGCTGGAGGCATGTGGAATAGTGGAGACCATCCACATCAGTGCTGCAGGTTTCCCTATCAGGGTTCCCTATGACAACTTTATCCAGCGTTACGGGTTGATCACCAACACCAGACTCCGGGCTCAAGGAGCTGAGACTGGCGATCAGATCGCTCTAGGCCCCGCTGTACAGGACATTCTGAATGCAGTCCTGAGGACCAGTTCCCCTGACCCCGACCTCAcacccaacaacaacaacgtgatggtgcattgtgggaagaCCAAAGTGTTCCTGACACATGCCATGCTGGAGCTATTGGAAGAGCAGAGGCACAGAGTGCGCTCTCAGAAGGCCTTCTCTATCCAGTGCTGCTGGCGCAGACACCAGTGCCGCCAGCAAGCCATCAGGACCAAGTGTGCCACTTTCATACAAGCAGTGGTGCGGGCCTGGCTGGTCAGGAGAGAGGTGAGGAGATGGCACAAAGCTGCTACAGTCATCCAGAATAAATGGCGGTTTTGGAGGGCTTTGATGGACTCCCTGGCTGAGGCGGAGCTGGACAACGCTGAGGATCTGCAGGAAGAAGAACAGGCACGCTCCAGCTTCCCCAAACCTCTAGCAGTCAGCAGCTGGCCTCTGGGCCTGGCTATGACCTTCACCCCGAGCgtcactgtgactctgaccacCACATGTTTCCACAAGGTCATGTCCCTCATGGCCACACTGAAGATCCCCTTCAGGAACGGAGAGTACAAAGTGGAGACCAACCAGTTCAACCATGGCGTGGCCTCCATCCGGGCACAGCCACAGGGCTCTGTGAAGCTCCACATGCAGAGATCTCCTCTCCGCTACGCCGACATGTACCCAGGACCCCACACCGACGAAGTGAGTGGGTTCAATCAGATTCTGCTGGAGAAAACATGAGTCTGTGTATCTGCTACTCCATATCAATCCACTCTAATCGACCAAAGCAAGCGTTACCCAAATCAATGCACCTTCTAAATGCACAAGCAGGAATGAATGCCAGTGAAACCCATAGCTGCCACATCTAATGTAATTCCATTTTGCTGTATATATTCTGTCGGTTAACATGCATGTGCCTTTTGTTAATTACAGTCTGCACACTACTGTAGgctattttatacatatttattctgAGATTATGCTTCCTGCCTGAGgaattcaattttataatcAAAGTCTACTTATCTGGTTTTGATAACactaatatttatttgattagaGATTATTCTTACATGTATTGCTTGAAAGATAAACTGAGAACTGGGGAAAGTTAAAGGGAAACACTAAAGACATGTTTGCACAGGAGATGTAAGTctaaatggggggaaaaaaaatccactactTGATGGCAACATTAGATTCAAAGCATATCAGGaaccaaacatgtcttgatTAATCgactattcctttaattcaTTTGATACATGATCAAACCACAGATTTTGTTTAGGATTTATAACTCGGAGAAAAGGGGGAACATGACATTAACTGGAACATTTCTGTACTGTTTAGTACTGTGTACTTGGTATGTACATTTCTGCTTTATTTCAGGCTTATTgcacagacaaataaaaaacactacTTTTATAGGGAAGAGTAGCATTTATGACTTAACGAGGAATTCATTTCTGTGGGTTTTTActatattttgactttttttcaggtctacatgttaataatatatttatatgtacaatGATCATGTACTGTATTGGAGATCTGGTACATTTTGAGTACTTGACACTGTAATATTCACACTACTCATGTTAAACTTTGGACATTACTTGGCACAAATGTTTGTCCTGTTTCTTATCAAGACTATAAATAAGCTAATAAATTTGCTATGGCATGTTGGATTTGTGGAA

Function

symbol description
myo19 Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921928.2 True 4026 mRNA 0.49 23 6633970 6653902

Neighbor

gene id symbol gene type direction distance location
tbx16l LOC108260093 coding upstream 88235 6537778 ~ 6545735 (+)
eral1 eral1 coding upstream 101076 6522164 ~ 6532894 (+)
LOC113531597 LOC108260041 coding upstream 182537 6436800 ~ 6451433 (+)
LOC113531512 NA coding upstream 201968 6415403 ~ 6432002 (+)
shpk shpk coding upstream 219790 6408024 ~ 6414180 (+)
c1qbp c1qbp coding downstream 4151 6658053 ~ 6662250 (+)
LOC113531024 LOC108260100 coding downstream 15030 6668932 ~ 6687976 (+)
srrm3 srrm3 coding downstream 37134 6691036 ~ 6773907 (+)
hspb1 hspb1 coding downstream 124090 6777992 ~ 6784388 (+)
LOC113531112 tspoap1 coding downstream 177782 6831684 ~ 6931919 (+)
G382207 NA non-coding upstream 53360 6579113 ~ 6580610 (+)
G382205 NA non-coding upstream 57788 6575979 ~ 6576182 (+)
G382148 NA non-coding upstream 83166 6549802 ~ 6550804 (+)
G382146 NA non-coding upstream 96739 6537031 ~ 6537231 (+)
G382138 NA non-coding upstream 120800 6502015 ~ 6513170 (+)
G382257 NA non-coding downstream 12737 6666639 ~ 6668385 (+)
G382274 NA non-coding downstream 153277 6807179 ~ 6809541 (+)
G382292 NA non-coding downstream 156451 6810353 ~ 6810567 (+)
LOC117596241 NA non-coding downstream 157216 6811118 ~ 6815375 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding downstream 297817 6951719 ~ 6954928 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 250285 6380662 ~ 6383685 (+)
G381893 NA other upstream 391273 6223168 ~ 6242697 (+)
G381835 NA other upstream 453057 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 581614 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 657045 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 308308 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 606351 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 884456 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1488681 8142583 ~ 8161257 (+)
G383217 NA other downstream 1528489 8182391 ~ 8213107 (+)

Expression


Co-expression Network