taok3b (LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565)


Basic Information

Item Value
gene id taok3b
gene name LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10272650 ~ 10284551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922013.2
CCCGATATTCCTCCCCAgaaagcttcttcttcttcttctctctctctctctctctctcatcctcctcctcctcggcGTGCAGTTCCGCGCGACATCCGCCGCCATGCAGCGTTCGCTCGCGGTCAGGAGCGCCGCGCGAAGCCCGTGATCAGCGAACGCTGAACGCCGCGGGTTGGGGAGGGGAGGAAACGGAGCGAGGTAGAGGATGCCGCGCGCGAACTATGCCTTACGCGGGACGCAGGGAGACGCAGCAGCATCATCATCGTCGGCGGCAGCAGCGGCAttatcctcctcctcctcctcctcctcctcaacagcatcctcatcctcagcagcagcagcggcggCGGAGCGCGCGGCTGGTGCCCACCCCCCAACATCATCCGTGGCTCGCGTGTTCGCTCCCCCCCTGCAGCAGAAGGAGGATGCTGGAGTGAGGGATGAGGCTCGAGACGGGCGCGCCGGGCCAGAGCCGCGGCCTGCTTCTTCTCCCCGAAGCTGCGCGCGCCGACGCTAAAGTTAGAGCCCCTGCAAGCATCCGCGCGCCCTTCGCCACCGTCGCACCGGCGTGTTCGGTCAGCAAGGAGATCCAGGAGCATGAGCAGGACTCTGTGTGGCGGGAGCAGATGTCAGGGTACAAACGCATGCGGCGGCAGCACCAGAAGCAGCTGATCGCGCTGGAGAACAAGCTGAAGGCCGAGATGGATGAGCACAAGCTCCGGCTGCAGAAGGAAGTAGAGACCCAGGCCAACAACACTTACATTGAACTGGAGCGGCTAGCCAAGAAGCAGGCTGCCCAGTTGGATAAGGAGATGAAGGCATCAGCCGCGGAGGAGAAGAGAATCCAGCAACAAATCTTGGTCCAACAGAAGAAGGAGCTGACCACCTTCTTGgacacacagaaaaaacagtACAGACTGTGCAGGGACAGGATGAAGGAAGAGATGAATGAGGACCTTAGCACACCAAAGGAGGAGAAGCAGGAGAGGCTGTCACGCCACAAGGAGACAATGCAGCGCTCACAGGCTGAGGAAGAGGCACAGCTGCTCAACCAGCAGAGGCTCATCTATGAAAGAAGCTGCCGTGCTCTGAAGAGACGAAGCCTCATAAAAAAACATGAGTTTGAACAGGAACAGATGCGGGAGGAGCTGAACAAGAAGAAGCTGCAGAAGGAGATGGAGCATGCGTTGATGATCCGGCAAGATGAGTCCACACAGGACCTGGAGCGACGGCAGTTGGAGTGTCTGCACAGGCTTCGCATGGAGCTGATCCGTTTGCAGCATCACACTGAActggagaaccaggaggaatACAACAACCGACGCCAGAGAGAGCTGCACAGGAAACACGCACTAGAGCGCCGGCAGCAGCCCAGGAACCTCAAGGCATTGGAGATGCAGATCAAAAAGCAATTCCAGGACACTTGTAAGGTCCAGAATAAGCAGTACAAAGCTCTGAGGAACCATCAGCTAGAGGTCTCCCCCAAGAGTGACCACAAAGCCCTGCTGAAGACTCTGAAGGAAGAGCAGACACGCAAGCTTGCTGTGCTGGCTGAACAGTATGAGCAGAGCATTAACGATATGATGGCCTCGCAAGCGCTACGTCTGGAAGCTGAGCAGGAGGCCGAGTGCCAGGCCTTGAAGCGGCAGTTGCAGCAGGAGATGGAGCTTCTGGATGCCTACCAAAGCAAGACGAAGGAGCAGGCTGAGGCCCAGCATGAGCGAGACATGCAGAAGTTGGAGCAGAAAGCATCCTTGCGCAGGGCTCACCTGGAACAGAAAATTGAAGAGGAACTGGCTGCACTTCAGAAAGAGCGGACCGAAAAAGTCAAAAATTTATTTGAGCGCCAAGAGCGAGAGCTGGAGACCTTTGATGTGGAGAGCTCCCGATTGGGTTTTGGAAGCTTGGCCTCATTTGACTTTCCCAAGGAAGATGACAGATGATCAAACCTAGGCTGGCAGGGCCATTTGATGCTGATGTCTCTGGATATGTTGTGCCTGTACTGTCACTAACTACTGGATTTACCAAGATCACCTTTACAGTGACCATGCTGGATCTGTCTTTTAAAATCTTAATTACTGGCTGGGGGAACTTCTGAAATTGGAACATAATCTGCAGCCGACACAAGTGACTTAATGGAGCTCAGAAAGCAACAGAGCTAAATCTAGAAGAACAGAACTTTTCTCCATGCCGTCGACCCACTTTTGGTATTAAAATCAGTAATTCAGGATATTTTAGTACAAGTAAGCACTTTGATATGTTTAAGTATGAACCCAACATGTAAAGTGAACATATTGTGTGAAAATGCCTTTGGTGTTATCAAAGGACATTGTGACTGTAGAATGTGTCCTCCGTCTTCACCGTGGCTATTagctgtttttgtctttgtttctcaCAGCAAATGTGAATACTGTTGGCGAAAGCTGTAAGCAAAGGCAGGTTTTGAAACAGtgtcagattttaaaatatagtgACTATATTGAGAGCATTCAGTTACTTTCATATTGTGGTAGAACACACACCTCTtttttaaaagggaaaaaaataggcACTATAATTTAATCATTGTTCAGTATCCTAAATTAATtggcatcattttttttaattactacaACAAATCAATGCAGTCAAGATTCCTTCCTGGTATTATTGCATGCACTTTAAAAGACAAATTCAGGTTGTGAAGTGGAGCATGGATCTGTCAGAGATTTTAGCTGTCTGTAAATAAAAGTGGTCCATAGCAGTTTTGTTTCATGGCTATTGATACTGAACATAAGCTTTATCTTTGATATGAAAGATTGCCAAATTGCCAAATGCCTTTAAGTTATGTTATGAATGTTTTagtttcctttcttttgcccAGGTGACATCATAGTTTGTTGAATTGTGACTCATTCAGTGTGGCGTTATCAATGCTCTTGtacaggcaaaaaaaatggtgcaATTTGTGTtgtaaaaattttatataaatatttgtatatgatAATCTAAATAGGGGTTTACACGTGTATTGGTCAGTCTTTGCCAAAATAAATATGGGAATCTTATTCAGTGGTGACAATGGAAGGCAAACTATTTTTGTAAGCAAAACGGAGAATTACCAGTTTCACTTGTAATGTAACAACAAAATCTATTATGGTTCTTTTTGGCAAGATTCCTGTCTAGTTGGTGttgagaaacaacaaaaaaaaagttaatcagCTTTTTAAGAAGTAAATCTTACTAAGTAATTCTTAAGAAGTTGATTAAGAATTTAAGTAATTCTTACAAAGTAATTCTTAAgaagtggtaatttgcaagcAAATACTTTAGAAAGCATTATGTGGGGCCAGGGCAATTAATATCTTTTTAAGCCCTAAAGATtcatatcttttttaaaaaaaaaaaaacacttgtgtcACACTATGCATACCTGGCACATAACATTGTGGAACTCAAGCTAAGGGATGCCATTCAGTTTCATATTTTGTGACTGTCATTACAGGCCTGTTTTCAAACAAAGCCATTGTTGAAACTGCCATTGCACAAGTGAAGTGatgttttaatgaataaacTGAATGAAGTTTT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase TAO3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922013.2 True 3567 mRNA 0.47 8 10272650 10284551

Neighbor

gene id symbol gene type direction distance location
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 10905 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 49618 10211942 ~ 10223032 (+)
hspb15 NA coding upstream 86489 10184088 ~ 10186161 (+)
dab2 dab2,LOC108260308,LOC107723357,LOC107691042,LOC107597220 coding upstream 89329 10170121 ~ 10183321 (+)
gas1b LOC108260269 coding upstream 137007 10132278 ~ 10135643 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding downstream 35513 10320064 ~ 10341504 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding downstream 82706 10367257 ~ 10378138 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 501006 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 741317 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 934507 11219058 ~ 11276976 (+)
G384466 NA non-coding upstream 143119 10129243 ~ 10129531 (+)
G384461 NA non-coding upstream 144679 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 149764 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 436738 9835704 ~ 9835912 (+)
G384197 NA non-coding upstream 458959 9813485 ~ 9813691 (+)
G384583 NA non-coding downstream 22123 10306674 ~ 10306908 (+)
G384606 NA non-coding downstream 73108 10357659 ~ 10358263 (+)
G384607 NA non-coding downstream 73719 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 76704 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 96019 10380570 ~ 10388271 (+)
G384178 ier5l,LOC108228905 other upstream 504614 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1497516 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1680269 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1707393 8558826 ~ 8565257 (+)
G383217 NA other upstream 2059543 8182391 ~ 8213107 (+)
G384593 NA other downstream 93662 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1013423 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1433467 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2506350 12790901 ~ 12800917 (+)
G386294 NA other downstream 3537237 13821788 ~ 13824055 (+)

Expression


Co-expression Network