tescb (tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949)


Basic Information

Item Value
gene id tescb
gene name tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10252587 ~ 10261745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922015.2
GGTAGTGACTGTTGCCAGGAGTTACAGCGCAGCGGATGCGCGTGAAGCGCTAGGACCGCGGGGAAATGACGAACTCACTCGGTTCAAATTTGCATTTGCCTAGTAGGAAACTGAAACCAGCGGATGTTCTCTATAGATCACTTCTGACAGCAAAATACGGATCCGTGAGGGAACCTTCCTGCCATTATGGGGGCTTTTCATTCAGTACCGGAAGACCATCACTATCGGATTTTGTCTGAGAAGACAGGCTtttcactGGAGCAGATAAAGATTCTTCATAATCGCTTCAAGCAGTTAAGCAACAACGATGATGTGCTACGGAGAGATGATCTTAACACGCTTCCAGACCTAGCAAGCAACCCAATTCGATCCCAGATTGTAGCAGCTTTCTTTGACAGAAGAAACTTCCAGAAAGGAGGTGAAGGATCAGTTCAAGAAATTAGCTTTGAGGAGTTCCTTACTGTCATGTCTTACTTCAGAGCTCCATCAGTGCACATGACAGAGGAGCAGAGAGAAGAGATAAGGAGGACCAAACTGCGCTTCCTGTTTAACATGCATGATACTGACAATGATGGGACTATAACACTGGAGGAATACAAACATGTGGTGGAAGAGCTGCTCTCTAAGAGTGGATCACTCGGAAGGGAGACAGCCAAGGGCATTGCAGATGCTGCCATGTTGGAGGTTGCTAGCATTTCAGTGGGACGCATGGGTCCAGATGAATTTTATGAGGGGATCACATTTGAGCATTTTGTGAAGATTCTGAAAGGAATAGAAATTGAGACGAGGATGCACATCCGGTTCTTAAATGTGGACACAACGAGTCTGTGCAAATGATGCCCACCTGATATACACCTATCAGCAATCGATGCTTCACCTGATATTCCAAGGCACCAATGATAACTATTAAGCTAAAGCTTAACAGAAAGGTAAATGGGTTATTTTTGCACTTAAAAGATAGCATTAAATTGGCTAAGTACTGTTGTGGTGCTGTTTCAGCTGTTTTAGGTGTGGCATAAATAGACCTTGCATGTTCACTCTAAGCACCACCTTGAAGATCTGTGATGAATCGCTTGAAGAATCAACTTACTTAGTTATTTATCtgttacttattattttttcaattcTAGAGACCTGAATGTTATTTAATTGTCATGTCttaaaagcaaagaatgtaCTTTTTTTCAGGGGGCATATTAGATATAGAATAGCAATAAATGTGGTATAGAATAGCAATAAATAACCTTTCTcactgtgaaacacacacataaaatactatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaattaaatGATGTCAGATAATGTCCGGTGTCATTCTGATGTATGAAATTAACATTATAGTCAGGGTTGTGATGGATActgagcctatcccgggaacataTGTCGTGCAATTCAGGGATACACCCTGGAACGGATGCCAGTACATTGCAGAGCATCACACAATTGCACAACCTAGTCACAGCTAGTTAGAGtgctccacctactggcatAGTTTTGAACAGTGGAAGGAAACAGGAGTgcagacactgggagaacatgcaaaactccacacagacaataaactGATCTCAGGACCATAAGGCTGAGAGTCAGGAATGCTACCCACTGTTCCACCATGCTACCCATTAATTTGAGTTGATTAATTTGAGCATCATAAACAGTACATATCCTCCAGAACACTGGACCACAGCCTGTATATAGAAGACTCTATACAGCTCTATGGTCGTTAGCCAAATATAGTTAGCTACAGTATGGTACAGAGAACAAAACTATAATGACTGGTCAGTTTCAATGTTTTTTAACCAGTCTGTATGTATTTTGTTATctaatctgtgtattttgttctcctGACTGTCATAGTTCGACACAAACCCTGtagtgttagcatgctaactaaaACCCACACCAGAGGATAAAAAGACACACATCAGGTGAGCAGAGGGTTCAGATCACTCGCTCTTGCCTGATATAaccatgtttaaatgtaaaaatatgcaGAAACTCAACAGCACCTACTGTTAGTTACTCGGTTCATGAGTTTTCTAGCTAAACAACTTCTCAACTGGGTAAGGCAATGAGGATAAATCAGCTGATTATCATTTATCACTCACTAACCTCCCTCAACATTACAGAACAAATTAATGCCTTACCTGTTTGACCAAAAAATAAGCATAAACTTCATCAGTCCTGAATCCTTTTTATATTATCATTCACTTTAATGGCAAAAAAGAGTATATCCTATCAAGTAAAATGTATTGAATATAGTcatatttatctagtatttcttacAATACAAGGTACAAGATTACACCAACCAGATATAAGATTATAAAAACTTATTTCTAGaatttttcttaataatttcaTTCTtgaaattttcttattttattggtggatcattttgcttctttctagaaataaatgcctaAAATGAGCAAAATCTTAAATTAtcagccaaaagaacaagactacttcaagcttaaaattagtaaaaaaatgtctagaaataggtttaataatcatatattctGTAAATTGTAATCCTATAATAgaaaatactagatacatttggctatattaaagatatttcCATATTTCAGATGTTATTGTGTACAGTGGCTTCACTGTAATTAGATTTCTAGTAGTTTTCTAGAGACACATTTCTTTTGTGTCTAAAGTGTGGAtatgatgatgtttgatgtgtctGAGCATTTGATGTGTCTGAACATAATAACTGTAGCTCATAGTGCTTCTGGTAGTGTATGTCAGAATTACATGAGAGTGAGGTAAATTTAACCAAGGTGAGAACTGTGTGGATCTTGTGTGGTGTTCCCAGTCTGAAAGCTCCTGTACAAAACTTTTACATAGCAAGCTTTATGTCAGTAGAAACAACTCTGTAACAACAGAGTCATGCCTATTTTTCTGGCCCACAATTTAAGTGAGTTTCATTTTGCTATGATGATTTTTATGAAAGCCAAGAACAATGCCATGACACCGAAATATGTAGTTTCTCTGACTTTAGAGTGAgtttgtgtattagtgtgtgtgtttgagagagaaagaagacttaaaatgagcaaaacaatttttaacaatttttaaattaattttggcAAGTTATGCTACATTATCACCATCATGTGACATACCAGAAGTACACTGAGATACAAAGTCAGACCagaaagtgtcataacacaaGCTTATGTCAACAAAATCTCTGTCATTTGACTCAGGTTTCTGGTCAGCTTGACATCAAAATTGATAATGCAGCTAACAACTGTTGGAGTAAGCCTTTATGAATGTTTAATGTATCTTTCTTTCAGTTAGAGCTTATGTAGGTTTCACATAGCCCTATGAACACCACTCCACAATCCTGATGAGCTTGAGTGAAGGTTATATTTGCTGACCAGCAGATGTCAGTACAGTTATATAGTACagttatatttttctataattttcaCAACTTAGTAATAAGTGGTTCTGACAAACTGTGTCAGAAATATCACTGTCAATATTCAGCCATGTATTGTACTTTCTGGACTATAAGGCACAATGTCTTCTATCTGATGTtgatataaaatacaacaattttttgtattttatgtcagCATCAATCATTGGCATAGGTGTAATGCTGGGAAGTTCCCACAGCTTTTAATATTCCCCAATTTTGTCCCCACCACTTTTTAAAGTATACAAATTGATTGTAAAATATCAGTTTcaccattttcacattttctgttatttacattaaactGCAATCATGATACGACGTGTGTGATTATACAAAATCCAATTTGATTATCCTGTGGACTGTAGAGTTTTAGAAAGCTGGTGTGGATTAAGCTGGATAAAATTGAAACATCATCTTCTCCATGGGATTCACTTGATactgaggaataaaaaaaatgcttgagaAA

Function

symbol description
tescb Predicted to enable calcium ion binding activity. Orthologous to human TESC (tescalcin).
tesc Enables calcium ion binding activity. Involved in several processes, including cellular response to retinoic acid; positive regulation of macromolecule metabolic process; and positive regulation of myeloid cell differentiation. Located in several cellular components, including cytosol; lamellipodium; and nucleoplasm.

NR:

description
calcineurin B homologous protein 3-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17612 TESC, CHP3; calcineurin B homologous protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922015.2 True 3981 mRNA 0.36 8 10252587 10261745

Neighbor

gene id symbol gene type direction distance location
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 29555 10211942 ~ 10223032 (+)
hspb15 NA coding upstream 66426 10184088 ~ 10186161 (+)
dab2 dab2,LOC108260308,LOC107723357,LOC107691042,LOC107597220 coding upstream 69266 10170121 ~ 10183321 (+)
gas1b LOC108260269 coding upstream 116944 10132278 ~ 10135643 (+)
fbxw2 fbxw2,LOC107723354 coding upstream 139432 10102353 ~ 10113155 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding downstream 10905 10272650 ~ 10284551 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding downstream 58319 10320064 ~ 10341504 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding downstream 105512 10367257 ~ 10378138 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 523812 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 764123 11025868 ~ 11096141 (+)
G384466 NA non-coding upstream 123056 10129243 ~ 10129531 (+)
G384461 NA non-coding upstream 124616 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 129701 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 416675 9835704 ~ 9835912 (+)
G384197 NA non-coding upstream 438896 9813485 ~ 9813691 (+)
G384583 NA non-coding downstream 44929 10306674 ~ 10306908 (+)
G384606 NA non-coding downstream 95914 10357659 ~ 10358263 (+)
G384607 NA non-coding downstream 96525 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 99510 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 118825 10380570 ~ 10388271 (+)
G384178 ier5l,LOC108228905 other upstream 484551 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1477453 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1660206 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1687330 8558826 ~ 8565257 (+)
G383217 NA other upstream 2039480 8182391 ~ 8213107 (+)
G384593 NA other downstream 116468 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1036229 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1456273 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2529156 12790901 ~ 12800917 (+)
G386294 NA other downstream 3560043 13821788 ~ 13824055 (+)

Expression


Co-expression Network