c2cd2l (c2cd2l)


Basic Information

Item Value
gene id c2cd2l
gene name c2cd2l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8419814 ~ 8465196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922064.2
CAGCCCTACAGGCAGAGCGGAGCGGAGTACAGCACTGCGAGCCTCTCAGTCGGTATTCACGGCTCCTTTCTGCCTTCTGCGCACATCTTCGGCTTAGCAGCGAGAATATCAGCGGTTAGCCGCAGAGGCTAGCTGTCAGTGACGTTCCTCATCGCCTCGGTGCTGTCTCCTTGCTGTGCTTTTCTACAGACCTTCAGTTTGATCGccggaggaaaagaaaaacacgACTCGCACGTTGATGAATCAGACTTTCCAGCCCATGTTGAAAATGGGACCCAAGTGATCAGGGGAGACGATGGACTTTGAGGACGTGAGCTGGCCGATCCTGGTGGCGCTCTTCTGCGTCTCGCTCCTGGTTGTGCTCACATGGCTCCTTCAGTTCTCACAGGCTTTGCTGAGGTCCAGGAGAGGCGGCAGAGCTGCGCAGAGCAGAGAGACACCGTGGCAGCTGCCCCTGCGCCTCACCCACCACACGCTGACGGGAGGAGTGTGGGGCTTGCTGCTCAGGTACCGGCTGGGCCGAGACGACTCTGAGGCCGGAGTTAAGGGCCTCCTGTCCTCACTTTTCACCTTCAGGTCGTTCAGAGAGCACTGGCAGCGAGCATGGGTGAGAGCACTCAACGAGCAAGCCTGCCGGCAAGGGAGCTCAATTCAAATCACCTTCGATGATAGCCTTCAGCTCCCTGTGACTGCATCCATCCAGCATGTGACCTGCACGGACCAGTCAGCACACAGCATGGTTCTGCAGTGCAAATGTTCAGTTGACACGGTAACGTTCCCTGTGATGGTCACTCAGCAGTCACCAGCAGCCGTCTCCATGGACACATACCAGGTTTCCATGGAGCCCATGCAGGCACAGTTGCAGGTCTGcttggaggaggtggaggaagaaGGTCTCCTGGTGTCCTGGATGTTTTCCCAGCAGCCCCTGCTCTCTTTAACCCTGACACCACGACAGAGAGTTCAGAGAGAGGACTCAGAGGCAGAGGTGGACGTGGATATGATAGCAAAGCTGGTGGAGGATACGCTGTACGCCACGCAGCCTGCAATGATCCTCAACCTGAGAGCATGTGTCTCCAGTCCTGCTTTTCcgagagaaaaagaagggagTCAAAACTCTCCGCAGCAGAACAATGCTATCAAACGCCTTCTGGTACGCCAGCTCAAAGTCTCCAGGATCAATAAAGGTTCGCAGGCTCATGTTGGGGAGCTGTGCTGCGTGCTGAGCCTGGACATCCCAGTGCTGGAGAAGAGAACCCGCTTCCTCACACCTTCCTCTAGCCCCAGAGCCACGCTGGACTGGGGGGAGGACCTTACACTggATTTGCAGCCAGAAACCAAAGAACTCAAAGTTAGACTAGTGGAGCGCAATAGCAAAGGAGAACAATTCTTGCCAGGCCACGCTTGCTTATCCCTGGATATCCCTAAGAGGAGTCCCAGTGGACAACAAAAGCTTTCCATCACACCAGGGCACGGTCTGACACCGACAGCTACCGTCACGTTGGAGCTCATGTACGTGGAGCTGAATGACGTGCGTGGATGTCATAACGCCACCCTACTCCGCTCCTCGCTCACGCCGTCCAAAAAAGTGGACGTGGACCGTACGATCATGCCTGACGGCACTATTGTCACTACGGTCACCACCATCCAGTCACGGCCAAAGCTGGAACGCAAACTAGGAGATTCTCCCTCCAAGTCTCCATCTAAGGTGGAGATTACGGAGAAAAGACCGACCGTGCTGACAGAGAGCTTCCAGAGCCGAGCCAGCATCAGCCCCACGGCCAGCAAAAGCCCCATCTCAAATGGGCTGGATCCTGTAGCAGAGACAGCAATCCGGCAGCTGACCGAGTCGGCCAATAAGGCGGTGAAGAAAACGCCCACTAAACGCAGCACCCTCATCATCTCCGGAGTGTCAAAGGTTCCCATTACAGAAGACAACTCTGCGCTGTCGGTGGGCTATGCTGCAGACATGGACGCTGCCTTGCAGGGCGAGAATTCTCCCTCAGGGGCCCCCAACCACCACGGAGCTGCTGCACACCAGGACGCAGATGAGACCACACCGTCCGACGCGTCTGAGCGGCCATCTGTGGACGACGTGGAGTCAGAGACAGGCTCTACTGGAGCACTCGAGACACGCAGCCTCAAAGATCATAAAGTGGGCTTCCTCCGGAGTGGCACAAAGCTCTTATTCCGCAggagacacagacagaagagCTCGAGCTTCAGCCAGTCCCACGAGGACGTCACCAACCTGGACAACGACCCGTCCACGGCTTCCTGCTCTTCCAGTGGTCGCAAGAAATCTGGAAGCTTCTCCCGCCGCCTCATCAAACGCTTCTCCTTCCGCTCGTCTAAAAGCAAGGGCAAAAACAGTTCTACAAACGGCGGAGCCAGCGCTCTCGACAACTGAATCACGAACAGAGAAAGGGGAAAGACATGGTGCAGGCGCCAGTCAAAAGACATTTGAAAGAGTTGTGTAAACGAAAATGTGGTGATTTGTGGTGTTCGTTTTTCAAAGCCTTTTGTGAGACTCTGTCATTGTTAGGGGCAAAAGGCCGAATTTTGACCCTTCGTGTCCAACGCACTTGACCCATGCAAACGATGAGGACAGATGGCTCAGGAAGACATTTGTCTCTGAAATCTCAGATATGGGGAAAACAAAGGGTTTGTGAACTTCTGAGAGACTTTTGATTGTctaaactgtttatttaataaaatacttcaaatgGCTGCTTTTCTGGGTAATAAGGAAGAACAACAGTAGGAGAGTGAAATGCTGTTTCATATGTTCAGCACAAGGGGGTGATATGAACCAATCCTCATCAAAGCCTCCCACTTTATGTTgctatgtgttttattatttattttaatttccatCGGCTGCACTTTGGAACTTAGTAATCAGATTGTTTACAGCGCCGGTGAGCGTTTCATCATGTTTGATCACTTTGTGTTTCGTAAGGTCATGACACTAAATTATTACTCCTTACCAAACTGGGAGTTTCTCATATATTACATATGGTGCAGCTTGTACTGTGTGCTTAGATTGTTTTGCAGTAGTTAATGGCAATTTAGATCAAATATTaagctctgttttttctgtatttgcctTTCATTGTGGCACAGTCttcttttataatatttatttgtgaacaaaaaaaaatatctcagtTATGTTTGAGGGGAATTTTGCTTGTAAGTTAGGACACAGGTGATGGAGATAAACTAAGTAAAGTGATCTATGTTTAttcttaaattatatttaattatatttacattaagttgaaaaatatttcagggttcatgcatatgaaaaaaaaaaacctcagggGACATTGTTAACGGTTTGCGCAAATAATTTTCCATCTTTCCAACACCACTCCCAGACAGTTTGCTCCAAACTTAAATTTACTATTTTCCCCCCTTACCTGCAAAACCCCCCCCTTTCCCAGCATGCATAGCTTAGAGAACCTGGCctaaatacatgtaaatagtGTTGTTTAAATGAGAATGCTTTAATGTATATATAGTGTTTCAGTTGTGGAGGAGAAGGCCATTTCCATATTCTCATTTAAATTAGCTTCGCACCTCAGATGGCAGGCTTTACAGTGACAGTTTAATTCCTTACTCACCCCAGACTacatagcttaaaaaaaaaaagatttaactGTACAAATAATTTGTCC

Function

symbol description
c2cd2l Orthologous to human C2CD2L (C2CD2 like).

NR:

description
phospholipid transfer protein C2CD2L isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922064.2 True 3686 mRNA 0.49 15 8419814 8465196

Neighbor

gene id symbol gene type direction distance location
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding upstream 87485 8328176 ~ 8332329 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding upstream 94055 8319937 ~ 8325759 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding upstream 150184 8197479 ~ 8269630 (+)
LOC113531515 LOC108259923 coding upstream 315709 8099847 ~ 8104105 (+)
p2rx1 p2rx1 coding upstream 622463 7770898 ~ 7797351 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding downstream 1150 8466346 ~ 8467007 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding downstream 16576 8481772 ~ 8494350 (+)
phldb1a LOC108260305 coding downstream 30522 8495718 ~ 8550534 (+)
adamts8a LOC108259710,LOC107598150 coding downstream 313078 8778274 ~ 8793835 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding downstream 328888 8794084 ~ 8808883 (+)
G383399 NA non-coding upstream 35311 8384245 ~ 8384503 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding upstream 64124 8352477 ~ 8355690 (+)
G383205 NA non-coding upstream 83510 8332457 ~ 8336304 (+)
G383181 NA non-coding upstream 256114 8162100 ~ 8163700 (+)
G383208 NA non-coding upstream 294066 8124643 ~ 8125748 (+)
G383443 NA non-coding downstream 42020 8507216 ~ 8508382 (+)
G383448 NA non-coding downstream 89400 8554596 ~ 8556843 (+)
LOC117596219 NA non-coding downstream 149107 8614303 ~ 8615355 (+)
G383609 NA non-coding downstream 272677 8737873 ~ 8738074 (+)
LOC113531289 NA non-coding downstream 485596 8950792 ~ 8953176 (+)
G383217 NA other upstream 206707 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 258557 8142583 ~ 8161257 (+)
dpm2 dpm2,LOC107664400 other upstream 875700 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 1158724 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1361615 6962210 ~ 7058199 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 93630 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 125114 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 299706 8764902 ~ 8775134 (+)
G384178 ier5l,LOC108228905 other downstream 1300544 9765740 ~ 9768036 (+)
G384593 NA other downstream 1913017 10378213 ~ 10379665 (+)

Expression


Co-expression Network