srrm3 (srrm3)


Basic Information

Item Value
gene id srrm3
gene name srrm3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6691036 ~ 6773907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922170.2
GCTTTACTGCCGCTGTCCAGCACTTCAGCATTCAGCACCGAGGCCAGAGTGCCAGCGAGAAGCCTGAACCTTACACAGCGaccaaaactgcacaaaaaccCCCACAGAGTCCGGGTTGAAACAGAAAACCCGTTCACGAGGCTTTGAGGCTTGAGGCTTGAGCAGATAGCTGTGGCCATGTACGAAGGGGCGAGGGTGCCCTCTCCTGAGGCCAGTGCTAATGGTGCCCCGGGTGCCGCCACACGGCCCAATGGTGATGAAGAAccggaagaagaagaagctgcaCCACCAAAGCCTGTGCTGGTGAAGAAGGCTCGCCGCGAGATCCTGGAccatgagagaaagagacgagTGGAGCTGAAGTGCATGGAGCTGCAGGAGATGATGGAGGAACAGGGATATTCAGAAGAGGAGATCAGGCAGAAGGTCGGGACGTTTCGGCAGATGCTGATGGAGAAAGAGGGAGTCATAACCAGAGAGGGATCTAATCCCAGACCACCGGTGACAGTTTTACCCCATGGTGTTGAAGAGGATGCAGAGGGCAGTGGGTTTGCTGATGGCTATGAGGACGACTACGACTGGCATGGAGACTACTATGATCGGGATTCCGTCACCCACGATGACTATAGAGCCAAGAGGAAGTCCAGCAGCTCACCTTCTCCTCCAcctaagaaaagaaagaagaagaagggaagaAGACACAGTCGAGTTGACAGCTCGTCTCCTACACGGCgaggaaagaggaagaagagtgGCAAGAAGCACAAGAgagataggTCCACATCTGGGtccaggaggaagaggagacaCAGATCAGGCACTCCAAagaacaaacacaaagacaagAGCAAACTGAGAAAGAAatctCCAGCAGAGTGTACCAGCAGGAGGCCCCAGCGCAGAGGAAGCTGCTGCAGCTCGCGCAGTGCCTCTGTCTCATCCACAGCCACCATCTCCAGATCCCCCAGCAGGTCCAACCTGAAGTACAGGACGGAGAGACAGAAGAGGTCTAGTCCCAGTGCATCTCCGTCTCCCGGGCTGGAGAACGGCCACCACAGCGAGCGAGTTCGCAACGGCAAACACTCCGGACTCAGCCAGCTAGAGGGCGAGAAAAGCAGCGATAAGCTACGGTCATTGGCTTCATCCTCACCAAGTGAAGAGCAGAGGCAGACGTCACCTAATGTAAGGGAAGTAAAGAGCCACAGTGCCCTCTGTAGGAGCCCTGGACGACAGCAGACACATGCCCAGATGGGAGAGGCAGGAAAGGGAGAAGAGAGGCAGCAGAGGGGTGGCAAGCTGTCCTCTGAGTCATCAGGAAAACGGGCAGGACGGAGCTGCCACTCTCCTGCCCATAGCAGTGACTCCCCACTCGATCTCCAGTCTAAAGCCAAGGGCACACACGTGAAGAAAGCAAAAGGGTCTCATTCATCTAAGAGGCACCATCATGGTAGGGCCGTGAACCGACAGCGCAGTGTGTCAGCGTCACCAACTCCACACCGGCGCACGTCCGGGCGCAAAAAGAGCAAATCAAGCCTACAGCAACGAAGCAGCTCATGGAGCAGTGTTCGCTCTTCTTCACGCTCCAAATCAAGAGAGCACGTGCAAAGCAAGACTAAGTCCCCACATACTCGACAGAACAACTCTAGGGAGAGGGACAGTCCTCACTACTCTGATGCCGAGAGAACTCGGAGACGCTCCCGCAGTTATTCTCCCATTCGTAAGAGGAGGAGAGACTCTCCCAGCTTTATGGAGGCTCGCAGAATCACCAGtgcaCGCAAGAGGCCGATACCATACTACAGGCCTAGTCCGTCTTCCTCCAGCTCTCTGAGCAGCTACAGTAGCTCCAGCCGAAGCCGAAGCCGGAGTCGGAGCTATGACAGCTACAGCAGCTACAGccggagcaggagcaggaatCGGAGTAAAAGCAGGAGTAAAAGTCGGAGCAGGAGCAGgggcaggagcaggagcagcagtcAGTCACGAAGCCCCAGTCAGGCACACAGCTACTACAGTCACAGCAGCTACGAGAGCCCTGGCTTCTGATAAGTGATGGCTACAGGAACAGATAGATTACAGGATGGatggaaaatgaaagaaatgaacaatCCAAACACTTCAGACTACCCTTCCTTGTATCTGTcataaataagtaattattaTAACGAAAAAGGTATTACCATAGCCAAGATGGCTGTCAAGACAGTATGGAAGATTTCTTATCTTCCATAAGACGATGACAAAAAtctaaacattattaaacaccAGAAATTGTTGCAGCACATCAGatcagatgatgatgatatcaCACAGATACAGGGAATACACGAAATCCAAAATAAACTGAGGAAAATTAAACATGCAGACGTTTGCAAAAATCACCCAAAAAAGAAGAGCAAAGGAATCTATCAAACATTCATGAGAAATTCTCACAATCTGTATACGAAGTGATGTTACAAACAAAACAGGATCGTATACGGACACCAAAAGCCAGGAGAACAAAACGAAGTAAAGCACTTTTATGGCCTGAAATTCTTCCAAGTTGCAAAAATAACCAAATCAAGGGTCAGTAGACGTGAGAAGAAGCACCCAGCTGGGATGAATGTAATCTAACAGGGGTCGAAGGAGACTCGATGGACAGTGAACACATTCTGTAATATTCTTCCCCACCCCTTTCCAAAGACTGACACACACGAACAAACAAACTTGAGAACAAACACAGACtgtattaatgatattaatgatattaatgatatttatCTCATGTTTTGCTAGTGgaaaacagaactgtgtgcttTTCTAAAAGAtgtattatacagtacatacaccgGGATGTTGACGTGTGAAGGTGTAAACTGCGAGCTCTGGCTGTAAACTATGCACTGTATATCCAAACCATATACGAAATAAGGCTTTGTATGTGGAAACGTTAGCATGATGCAGCAGAGGAGACTTTCATATACGAGCACCCGgccaacaccacacacacacacacacacacacacacacacacacacagatgtggaTGTAAATTTCTCTTCTACTCCTCCTTTATTCTCGGGTCTTGTTGACCATTTCATATCGGATACACCTGTATGCAGAGACCTTTTAGAAATGTATGATTTTGGTCACTATCCCACTTTCTTTGGTTGTGGGTATTGCATACATGGTTGTATCGCTATTTAGAGCTTTGACTAATTTAGTGCATTAGTTCTGTACagttattataataatcatCGCTGTTGTCAGTACCTGTCCTTGAAACCAGGCTGCAAaaacccacatgcacacacgtcTTTTTgatcatactgtatgtatttaactatgtattatttatttacctaattgttcttatttattcattatttatttgatatttattatgtatttattcagtgCTTATTTATTCATGCTGAAACATTAATGAAGAATTCCTCTTGCTTCCTGCatctaaaaattaaataagaaagaaattattggattggattttttaaatttcagcaaGAAATTGCTTCTACCTAACATTTATTTCACTAACTGAAAATtgatttaaattgaaatatgaTTTTCCTGTTTTAACCCTAAGCATTAGTGGTACAAACTTATTGTAGTTCTTGACTAATGAAGAGATcgctatttatttaatttttttttaactattttgcACATACCTTAATTCAGGAATCTTTATCAAAcagttattactgttattgGCTAAGAACAGTTTCTGCCTCTCATACCTTTGATTAAGTCTCAATTCAGATTCCCTATAAATCCAATATGGTCATATTTCTATCCCTGTATGACTTTTACTGAAATTGACAAATGAGTTGATGATGCAATCAGGGAAACATGCTCACagtcttcctctcctctcttgcTCACACCTTTGTCAGTGTTCTTGGAGTCATCCTTCATTCATTGTGGATCAATACCCTCTTCAGTAACAAGATTATACAGCGCTTATCATGGGACTGTATAGAAGTCAGTAGATGTAGTGTACTAGTTATTATTCTACAGAAAATAAAGTATATTCCAGTGGAAACCTGAAA

Function

symbol description
srrm3 Predicted to enable mRNA binding activity.

NR:

description
PREDICTED: serine/arginine repetitive matrix protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922170.2 True 4049 mRNA 0.45 14 6691036 6773907

Neighbor

gene id symbol gene type direction distance location
LOC113531024 LOC108260100 coding upstream 3060 6668932 ~ 6687976 (+)
c1qbp c1qbp coding upstream 28786 6658053 ~ 6662250 (+)
LOC113531298 myo19,LOC107591502 coding upstream 37134 6633970 ~ 6653902 (+)
tbx16l LOC108260093 coding upstream 145301 6537778 ~ 6545735 (+)
eral1 eral1 coding upstream 158142 6522164 ~ 6532894 (+)
hspb1 hspb1 coding downstream 4085 6777992 ~ 6784388 (+)
LOC113531112 tspoap1 coding downstream 57777 6831684 ~ 6931919 (+)
mtmr4 mtmr4 coding downstream 306200 7080107 ~ 7149766 (+)
ca4a LOC108259876 coding downstream 389392 7163299 ~ 7179897 (+)
gusb gusb,LOC107591494 coding downstream 450803 7224710 ~ 7238694 (+)
G382257 NA non-coding upstream 22651 6666639 ~ 6668385 (+)
G382207 NA non-coding upstream 110426 6579113 ~ 6580610 (+)
G382205 NA non-coding upstream 114854 6575979 ~ 6576182 (+)
G382148 NA non-coding upstream 140232 6549802 ~ 6550804 (+)
G382146 NA non-coding upstream 153805 6537031 ~ 6537231 (+)
G382274 NA non-coding downstream 33272 6807179 ~ 6809541 (+)
G382292 NA non-coding downstream 36446 6810353 ~ 6810567 (+)
LOC117596241 NA non-coding downstream 37211 6811118 ~ 6815375 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding downstream 177812 6951719 ~ 6954928 (+)
G382380 NA non-coding downstream 292906 7066813 ~ 7067761 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 307351 6380662 ~ 6383685 (+)
G381893 NA other upstream 448339 6223168 ~ 6242697 (+)
G381835 NA other upstream 510123 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 638680 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 714111 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 188303 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 486346 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 764451 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1368676 8142583 ~ 8161257 (+)
G383217 NA other downstream 1408484 8182391 ~ 8213107 (+)

Expression


Co-expression Network