LOC113531515 (LOC108259923)


Basic Information

Item Value
gene id LOC113531515
gene name LOC108259923
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8099847 ~ 8104105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922291.2
ACCCGGAAGTTCACAGCGACGTCACTGCTGTGTTTACAGTAGCCTTGTGTTTGGGCTTGCCGGTTATGCTATTTTATTAAAGCTTCTATTTTGCAGTTATGTAGTGAGTGAACTGTGCGCAGCACGATGTTAAAATATGTAGTAGCGCTTATTTCAGTGAGTGTGGCGCTCTGGAGCGGGTGTGAGTGGTTAAACTTGTGGTTTTGGGAGCTGGCTGAGGTGTCTCAGGACTCGGGCAGACTGCTGAGGCAGGAAGAGCTGTCCCTTTATAACGGCAGGGAGGACAGTAGAGGACTTTACCTCGCCATTTTAGGACAGGTGTTTGATGTTGAAAAAGGGAGAAAGCACTACGGTCCTGGTGGAGGCTATCGTTTCTTTACAGGCCGAGATGCCTCTAGGGCTTTTGTGACAGGTGATTTTACAGAGGCAGGGTTGACCGATGATGTTTCGGACCTGTCTCCATCTCAAATAGTGGCACTCTACGACTGGCTGGCTTTCTATCAGAAGGACTACACACATGTAGGTAGGTTAATTGGTCGATTCTACAGCGAGAGCGGAAAGCCCACAGACGTCCTGCAGCagGTGGAGGCCTCATTGGCTCAGGGGCTGAAACTGAAAGCCCAGGCTGAGAAGGAGAACGAGCTTTATCCAGCCTGTAACTCCGAGTGGAGCTCTGACAGAGGAGGACGTGTTTGGTGCTCCACTAAAAGCGGTGGAGTGCACAGAGACTGGGCTGGCGTTCCCAGAATGCTCTTCTCACCCGGTTCAGGCCAgacacgctgtgtgtgtgtacgactGGATGATCCCACACATTCGAACAACCCAAATCTCCAGGAGTACAAAGACTGTCCACCTCAAGCAGAGTCATGTCTCCTTAGCCAAGACTGAGCTTTCTGAGATTTTCTAACTTTTTATATGTCATTAGTTACTATATTTTAtgcaataaaattttttttttttaaaaaaaactttaaaaatctgatttgacTGGTCTCAGGATGGACAACCAGACAGGATACATTTAAAGGTGTTGTGTAAgagttttctgtttaaaatcATTGTTTTGGGTTCATTTCCTTCATAGGTCATTAAAAGTCAGTGGCTTTGGAAATTTATCAAAAACCCATCAGATACAAGTGATGTTGGGTAAGAAGGAATCATCATGTGTTACCTGCTGGCtcgacccgcctcctctccatcTGCAGCTGATGCTTGACCACGCCCCCCTgccatatttatattatatatttttttaactctcagtgatTTACTTGCGAGAAATTACAGTTTAAGGCAGTTTGCTGATTCATAAATGTACTCTCCCGACTCCCCTCAGAATATTTACACTCATCatgcactttaataggaacacctgtatacctgttcattcatgtaattctctaatcagccaatcatgtggcagaagcagAATGCttaaaaatcatgcagatacaggtcaagagcttcagttagtgttcacatcaaaaatcaGAACGAGGAAAAAATGTCATCACTGTGAGTTTGACCGTGGGGATTGTAGTCCAACCTGTTTAGgctgcgttctgagatgcttttctgctcagcacggatgtaaaaagtggttatttgagttaccgtagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922291.2 True 1620 mRNA 0.45 5 8099847 8104105

Neighbor

gene id symbol gene type direction distance location
p2rx1 p2rx1 coding upstream 302496 7770898 ~ 7797351 (+)
LOC113531275 NA coding upstream 479515 7617979 ~ 7620332 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding upstream 496518 7565787 ~ 7603329 (+)
pip5kl1 pip5kl1 coding upstream 536167 7546460 ~ 7563680 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 562877 7487816 ~ 7536970 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding downstream 93374 8197479 ~ 8269630 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding downstream 215832 8319937 ~ 8325759 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding downstream 224071 8328176 ~ 8332329 (+)
c2cd2l c2cd2l coding downstream 315709 8419814 ~ 8465196 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding downstream 362241 8466346 ~ 8467007 (+)
G383128 NA non-coding upstream 113479 7985612 ~ 7986368 (+)
G383067 NA non-coding upstream 190621 7905334 ~ 7909226 (+)
G382942 NA non-coding upstream 434159 7662867 ~ 7665688 (+)
G382932 NA non-coding upstream 449774 7649621 ~ 7650073 (+)
G382931 NA non-coding upstream 450324 7649309 ~ 7649523 (+)
G383208 NA non-coding downstream 20538 8124643 ~ 8125748 (+)
G383181 NA non-coding downstream 57995 8162100 ~ 8163700 (+)
G383205 NA non-coding downstream 228352 8332457 ~ 8336304 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding downstream 248372 8352477 ~ 8355690 (+)
G383399 NA non-coding downstream 280140 8384245 ~ 8384503 (+)
dpm2 dpm2,LOC107664400 other upstream 555733 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 838757 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1041648 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1716162 6380662 ~ 6383685 (+)
G381893 NA other upstream 1857150 6223168 ~ 6242697 (+)
spns3 LOC108260438,LOC108260072 other downstream 38478 8142583 ~ 8161257 (+)
G383217 NA other downstream 78286 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 454721 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 486205 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 660797 8764902 ~ 8775134 (+)

Expression


Co-expression Network