rcc1l (rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900)


Basic Information

Item Value
gene id rcc1l
gene name rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13876835 ~ 13889267 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922387.2
TGCCTCCTGTGCGAGTTTTAAAAACATGTCTCAGAACAGAGTAACATAGTAAACAGGAGTATAAACTTCTGCATAtgtaatattagaaaaaaaaaaaattgaggttaatagagaagaaaaaatatatatagctatatagCGGATGAGCACGCGAGGTCGACTTATTTCTTTAatgtaacgttagctagctagctagcatggtTAGATAGGCTTGTAGTAGTGtacagctagcttgctagttttGTTGACTTCTCCTCATTGACAGCTGACGCTGAATGGCGCTATGGCGTTAATTTGTGCTCGTGCTGGAGCTCGAGCTCGTGTTCGACCCGGAGTTGTTCTGAGCTGCCGTTTATTTTCCTCCGTAGCGAcaagcagagacagagaagcCCGCGACGAGGTGCCGCTGTTCCGGTATGTAGGAGAGCGCAGGAAGCCCACTGATAAAGTGTTCGTGTGGGGCTTCAGCTACACAGGAGCCCTCGGCATTCCCAGCTTTGTGGTTCCCGACAGCGGCAGGAAAAACCCCCGAAAATACCAACTGACCCCTTACCGCCTGGATACAGAGCAAAAGaTCTCTTCAGCAGCCTGTGGTTATGGCTTCACATTACTGGCATCGAATACCAAAGACATCACAAAAGTGTGGGGTATGGGCCTTAACAAAGACTCCCAGCTGGGCTTCCAACGCACCCAACACGACCGGCATAAAAGTTATGAATATGTGCTGGAGCCGTCCCCTGTGTCTCTGCCGCTGGCGAACCCTCAGGAGACGCGTGTCCTCCAGGTGTCCTGTGGTCGAGCTCACTCTTTAGTGCTCACAGACTCTGAAGGAGTGTTCAGCATGGGTAATAATGCCTATGGCCAGTGTGGAAGGAAAATCATTGAGGATGAAGTTTACAGTGGCAGCCATCTTGTCCACAAGATAGAGGGATTTGATAGTCGAGTTACTCAGGTGGTGTGTGGGCAGGACCACAGTTTATTCCTGACTGAAACAGGCTCTGTGTATGCCTGTGGCTGGGGGGCGGATGGACAGACAGGTCTGGGCCATCACAACAAGGCTGCATTGCCTGTCCGAGTTGGTGGTGATCTGGAAGGGGTCAAAGTTCAGCAGGTGAGCACGTATGGAGATTGCAGCCTGGCTGTATCCACAGAGGGTCACGTCTTTGGCTGGGGCAACTCGGAGTACCTGCAACTCGCCTCGGTCACAGAGACCACACAGATCAGCTCTCCACGGCTGCTTCCTCTGAAAGGAGTAGGTAAGGTGACGCAGGCGGCGTGTGGCGGAACTCAGGTCGCCATACTCAACGAGGGTGGAGAAGTGTTTGTGTGGGGCTATGGAATCCTGGGAAAAGGGCCTAATCTGGCTGAGTCAGAGATCCCAGAGAAGGTGCCAGCAACGCTTTTTGGGAAGTCAGAGTTCAACCCGACGGTAAAAGTGTCTCACATCCGCTGCGGGCTCAGCCACTTTGCAGCCATCACAGATCGTGGCGAACTGTTCGTCTGGGGTAAGAATGTGCGAGGATGTCTTGGCATCGGGAAACGTGATGACCAGTATTTTCCATGGCGGGTGACTGTACCAGGTCACGTGGTGGACGTGGCATGTGGCGTGGATCATATGGTGGCGCTGGTCAAGTCTCTCATATGAGCTCAAGCTGTGTTGGACTTCACACTGCTTCCTTTTCTCAAGCTACCGAGCTCCAGGTTGAGGACTGGAGCTTGAAGCTCCTAAATCGTGGCTTCTGAACCTTTTCCTGAGCACTCCTCAAGGAAGAGTGTATTTAATGTGAGTAGGACATGCAACACCTTGTGCATATGAAAAACTGACATCTGGAAATCCATGCACATTCAGTAATTGACTATTCAATACCGGGCCCTGATCTGTGACGTTAAGCTGCATCCACGTGAGCATCACCGACCCTAAGATCTAAAACCAAGCTGGAATAttgacctttttttcttttttactccatttattatgttattttggagcgatacattttttaaaaaaaagggtctAGTATGTAAAGATCCATGAATGTGATGTGAGTGACGCAAGTCTCTTGTGTCAATGCAGAGAAACCCAACATCTGTTTCACTTGGCTTCCTTGTACAATGACTCAAGTCTGTTCTGTAATAAACTTGTCTTAACATCGTTAAACATAACTGAGAAGCAGAGAAGTAGCCAACTGTGCATCCAAGCAAAGCTGATATTAAAGATGCGGTCAGCGATTTAAGTTTCGCTTCTCCTTGTATTTTGAGAGCTGGCAGTAAAATATCGGAGAAAAACCTC

Function

symbol description
rcc1l Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human RCC1L (RCC1 like).

NR:

description
RCC1-like G exchanging factor-like protein

GO: NA

KEGG:

id description
K23495 RCC1L; RCC1-like G exchanging factor-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922387.2 True 2290 mRNA 0.48 11 13876835 13889267

Neighbor

gene id symbol gene type direction distance location
ncf1 ncf1 coding upstream 1926 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 66281 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 112750 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 125012 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 163604 13707657 ~ 13713231 (+)
rad51d rad51d coding downstream 197375 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 859171 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 902866 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 921835 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 969290 14858557 ~ 14860744 (+)
G386348 NA non-coding upstream 642 13875938 ~ 13876193 (+)
G386342 NA non-coding upstream 21741 13854858 ~ 13855094 (+)
G386330 NA non-coding upstream 34189 13842343 ~ 13842646 (+)
G386265 NA non-coding upstream 97696 13687263 ~ 13779139 (+)
G386284 NA non-coding upstream 139150 13728187 ~ 13737685 (+)
G386350 NA non-coding downstream 1736 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 12717 13901984 ~ 13903993 (+)
G386359 NA non-coding downstream 34553 13923820 ~ 13924243 (+)
G386361 NA non-coding downstream 37121 13926388 ~ 13926592 (+)
G386374 NA non-coding downstream 54442 13943709 ~ 13943939 (+)
G386325 NA other upstream 48687 13825850 ~ 13828148 (+)
G386294 NA other upstream 52780 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1075918 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2041791 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2550780 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1274117 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1355738 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1465093 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1472091 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1918282 15807549 ~ 15859905 (+)

Expression


Co-expression Network