btf3 (btf3,LOC107655933)


Basic Information

Item Value
gene id btf3
gene name btf3,LOC107655933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12002274 ~ 12010222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922398.2
ACACGTACTATTCTTAGCCATTTTTTTCAACCTGCTGTGATGCATTTCAAGCCTGACGTCACTtccgtccctctctctctcgcttccATCTTGCTCTCCGCGTGTGTTTGCTGCTAGCGTGCAGATGAAAGAGACAATAATGAACCAGGAGAAATTAGCCAAACTGCAGGCGCAAGTCCGCATCGGTGGAAAGGGTACTGCACGCAGAAAGAAGAAGGTTGTACACAGAACCGCTACCGCAGATGACAAGAAACTTCAGTTTTCTCTGAAAAAGTTGGGCGTCAATAACATCTCCGGCATTGAAGAGGTGAACATGTTTACAAACCAGGGAACAGTGATCCATTTCAACAACCCCAAAGTGCAGGCTTCGCTGGCAGCCAACACCTTCACTATCACAGGCCATGCAGAGACCAAGCAGCTCACAGAGATGCTGCCATCTATCCTCAATCAGCTCGGTGCCGACAGCTTGACCAGTCTGCGGAAGCTCGCTGAGGCCCTGCCCAAACAAGcTGGTGATGGAAAAGCACCAGTGGCAGCAggagaggaagatgatgatgaagttcCAGATCTTGTGGAGAATTTCGACGAGGCTTCAAAGGACGAGGCTAACTAACtcgaaaggagagagagacgttCAGAATCTCCAAACTCAGCTGGGCCACGTGGGACTCCCTCTTCCCCTCACTttgagcagttttttttttttttttttttaaatgtattgcaatctccatttatttttttcctctcgtgCACTGCTGTGTTCCCCCTGTGTCCAAGCTGAGAGTATGAGAAGTGTGTTTAACCACACAGTGTTGTAGTGTGGTGTACGAGTGTGTGCAGTCCCCAGGGCATCCTGCCCATCTCTCTCCGTTACTGAGACTCTCCTTTGCGGCCTAGCTGAAACCCACATCTGGAAATAAACATTTGCTATTGATGAgcttaataaaaaca
>XM_026922399.2
cgtccctctctctctcgcttccATCTTGCTCTCCGCGTGTGTTTGCTGCTAGCGTGCAGGTCAGTGAGGAGATCTAAAATACTCTCTTTCCTGCACAGACACTTCCAGCTCCAAGGCTCAAGATGAAAGAGACAATAATGAACCAGGAGAAATTAGCCAAACTGCAGGCGCAAGTCCGCATCGGTGGAAAGGGTACTGCACGCAGAAAGAAGAAGGTTGTACACAGAACCGCTACCGCAGATGACAAGAAACTTCAGTTTTCTCTGAAAAAGTTGGGCGTCAATAACATCTCCGGCATTGAAGAGGTGAACATGTTTACAAACCAGGGAACAGTGATCCATTTCAACAACCCCAAAGTGCAGGCTTCGCTGGCAGCCAACACCTTCACTATCACAGGCCATGCAGAGACCAAGCAGCTCACAGAGATGCTGCCATCTATCCTCAATCAGCTCGGTGCCGACAGCTTGACCAGTCTGCGGAAGCTCGCTGAGGCCCTGCCCAAACAAGcTGGTGATGGAAAAGCACCAGTGGCAGCAggagaggaagatgatgatgaagttcCAGATCTTGTGGAGAATTTCGACGAGGCTTCAAAGGACGAGGCTAACTAACtcgaaaggagagagagacgttCAGAATCTCCAAACTCAGCTGGGCCACGTGGGACTCCCTCTTCCCCTCACTttgagcagttttttttttttttttttttaaatgtattgcaatctccatttatttttttcctctcgtgCACTGCTGTGTTCCCCCTGTGTCCAAGCTGAGAGTATGAGAAGTGTGTTTAACCACACAGTGTTGTAGTGTGGTGTACGAGTGTGTGCAGTCCCCAGGGCATCCTGCCCATCTCTCTCCGTTACTGAGACTCTCCTTTGCGGCCTAGCTGAAACCCACATCTGGAAATAAACATTTGCTATTGATGAgcttaataaaaaca

Function

symbol description
btf3 Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol and polysomal ribosome. Orthologous to human BTF3 (basic transcription factor 3).

NR:

description
transcription factor BTF3 isoform X1

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922398.2 True 954 mRNA 0.48 6 12002274 12010222
XM_026922399.2 False 952 mRNA 0.48 6 12002339 12010222

Neighbor

gene id symbol gene type direction distance location
ptcd2 ptcd2 coding upstream 320303 11643123 ~ 11681971 (+)
ttc33 ttc33 coding upstream 485221 11461703 ~ 11517053 (+)
mapkap1 mapkap1,LOC107591490 coding upstream 725298 11219058 ~ 11276976 (+)
fer fer,LOC108411346,LOC107691727 coding upstream 906133 11025868 ~ 11096141 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding upstream 1176298 10785557 ~ 10825976 (+)
arhgef28a arhgef28 coding downstream 15838 12026060 ~ 12118438 (+)
LOC113531115 NA coding downstream 243605 12253827 ~ 12264084 (+)
hexb hexb coding downstream 258954 12269176 ~ 12286124 (+)
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding downstream 595059 12605281 ~ 12716830 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 986036 12996258 ~ 13020139 (+)
G385195 NA non-coding upstream 257343 11744196 ~ 11744931 (+)
G385187 NA non-coding upstream 330234 11669493 ~ 11672040 (+)
LOC117596234 NA non-coding upstream 362234 11626719 ~ 11640040 (+)
G385025 NA non-coding upstream 612759 11385508 ~ 11389515 (+)
G385014 NA non-coding upstream 654458 11347602 ~ 11347816 (+)
LOC117596260 NA non-coding downstream 172237 12182459 ~ 12190468 (+)
G385429 NA non-coding downstream 270367 12280589 ~ 12322801 (+)
LOC117596248 NA non-coding downstream 350391 12360613 ~ 12403419 (+)
G385588 NA non-coding downstream 459501 12469723 ~ 12470164 (+)
G385594 NA non-coding downstream 537615 12547837 ~ 12548116 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 167230 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 676219 11297974 ~ 11326055 (+)
G384593 NA other upstream 1622609 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 2234238 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 3227140 8764902 ~ 8775134 (+)
zgc:63972 LOC108260458 other downstream 780679 12790901 ~ 12800917 (+)
G386294 NA other downstream 1811566 13821788 ~ 13824055 (+)
G386325 NA other downstream 1815628 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 3153162 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 3234783 15245005 ~ 15274079 (+)

Expression


Co-expression Network