LOC113531586 (gas2l2)


Basic Information

Item Value
gene id LOC113531586
gene name gas2l2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13751910 ~ 13764085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922404.2
GCGCATTGTCTTGCCATGTCGGGAATTGAGCACGCGTCGACGCAGAGCATCCGACCTTACAGGTCGTGTGAGGAGTACCTGTACGCGATGAAGGAGGACCTGGCCGAGTGGCTGAACGACCTGTACGGCGTGGACGTGACGGTGAGTAACATGGTGCAGGCGCTGGAGACGGGCGCGCTCCTCTGCACTCACGCCAACAACGTGACGCGCGCCGCCGCCGACTTTCAGCTCAAACACAGCCGCGCGCGCGCGCACCTGCCCGCATCCGGGGTGACTTTCACGAGCTCGGCTCAACCCGCAACCTTCCTGGCCCGGGATAACGTGTCCAACTTCATCCACTGGTGTCGGAATGAGATGCACATCAAAGACGTTCTGATGTTTGAGACAGACGACCTTGTCCTGcgaaagaatgagaaaaacgTGGTGCTCTGCCTACTCGAGGTGGCTCGACGGGCCTCTCGCTTCGGCATGGTCGCGCCTGTCCTTATTCAGCTGGAGGAGGAGATTGAGGAGGAGATTCGCGAGGAGACAGTGGAGCCTGCGGTCCAGAGACGCTTGATAAACACTGAGAACCTGGATGAGATGGTTCAATATCTGATAAGTCGCTGCACTTGTCCCAGTCAGTTCCCCATGGTGAAGATCTCAGAGGGCAAATACAGAGTCGGAGACTCTAACACCATCATATTTGTGCGAatcttAAGGAATCATGTGATGGTGAGAGTGGGTGGAGGATGGGACACCCTGGAGCACTATCTGGACAAACATGACCCCTGCCGCTGCACATCTCTCTCCCATAAACTGGCGCAACGCCCTGCTACTCCAGTCCACGAGATCAAAGCCAGGCAATGCGGGCCTGATGGCCAGGCTACGTCTCAAATCTCTTTGGTGCTGAGCCGAGCCCAGTCCCCCATCGACCCTGTAATCTGGACCCCTTCTTCTCCCACTAAAATCCAGAGATCAGAGCTGGGGCTCAGGAATTGCCCATCTCCTACTAaACTAAGGGTCCCTTGCCGACAGACCTACTCTGATACGAAGGAAGTTCTGAAGTCCACTAGCAGAACAGGCAGAGAAGCCAGTAGGGTGTCTCCATCTGCACGTGTAACCAGCAGTCTTCCACGGCCAACTCGCCCGCCCACCCCACCACAACCAGAGACTCAGCGTCCCAGTACACCCTTGGTCTTGCAGAAGGTCTACAGCCAGACCTTTCCTCCACCCCAGGAAGGGCCAGATAACAGGCTTGGGCACAATTGGACTAAATCGCAGATTGTATCAAAGCTGAGACAAAATGCCACAACTGGGCCAAAGAACAACCAGGATTTTCAAAGCGTTCCAGAGAAGCCAGGGGTTTCAGTGTCATCTCGGCCTTTCCAGTGTGTTACACCAGTTCAAGGTCTTgcaagcaacaacaacagccagCAAGACTCTCAAGACAATGGGAATTCCAGAAAAAGACCCGGGTTCATTCGGACATTTTCTCCTACAAAAGGGCTAATGGGTGTCATATCAGGGGATGGACATAATAGGCTCCTTGTGTCGAATGGAAAAGGCCAGTCATCAGGCAATTTATCCCAACCTACCAGACTTCAAGGAAATGAGAATAACCGACAAAGATCTTCTTCACATGGTGACAGAAAGCACCACTTGGATATTCCAAAGCACACTGTACTAAATTCTGTCATCAACATAAGCAAATCAGACTTCAACAGCACGATGGGAGAGCCATCTCACCCTGTTTCTGTTGTGAATGCAGAAAGAAGCTATCTCTTCACTCCTCCTCCAATCAGTCCTGCTCAGGAGGCCATCCTGTACCAGAGCCTTGAGGAGGAGATCCTGTTTAATCTACAGCAGCTTGGCATGGACTCTGATGGTGGTGACTCAGAGAGTGAGCAGGACAGTAGTCAGCCTGACACCCCAATTAAATCTCCAGAGATCTCACACGAGATGAGGAAACCTTCTATCCACAACACATCCCCTGGTGCATCCTATTCATCCTCTAGACAAACTACTGCAAGGGATGCTAGTTTTGAAGCTGTCCTTGGTGAGCTTTCAAATGGGAGGAGACCACTTGAGAAAGTATCTGTTGAAAGTTGGGTGAACAATTTCTCCAGAGATCACAGAGGCAAGAAGCACGAAAGTCAGACTAACACAGATAcaagacacctgaatgttttcaAACCCTCTATGGCCAGTTCCTGGTCTTCCCTAGGCTCGAGTATGGATTCAAAAGATTCTGTTGAACCATCCAAGAATGCTGAAGCCAACAACTCTGGGACTGGCAATAAGGAGAAGCCATGGGCCCCTTCCTCATATCAGAAGAGGTCCTTGAAAAAGCCAGAAAGAGTGCCTTCTATCTATAAGTTGAAATTGAGACCTTGTGTCCGCCCCAGACGGGACCACAGACCTGATAAGACACCTACAAAGATTCCCAAACCAATTTGCTATAGAAGAAGTCCAAGTCCAGGAGACACCACTCAGAACAATATGTCAGTGCAAAGCATTGTTATATCTGATACTCAGAAAGGACTCAATGTTTCTCGTAGAGCTTCCACCAAAAGACGCTTGAGGAAAACCTCTCAAACTACATCCAAATTCAGTGCCACAAAGTGCAGAGGAGGAGACCAGGAGATGATGGCTAATCAGGAGCTTGAATTCtgggtttaatgttatttttttttacatatatttttgctCTCAGTTATAATTTGTGCCATGTTTTGTATCTCAGACATTAGTAGGCGTAAATGCATTTAGTTATGGGCTAAGTAACCAgttcagtaaccacttcatctttgtcagggtcacagtggatctagAGCCTACCCTCTACATGGGATGCCAGAACTTGAACTTGATTGAACTCAAGACtctagagctgtgaggcaacaataCTGATAGATTGTTAGACTGATAGCCCTGATGgagttatatttttacatttgcttAATcgactgatgcttttatccaaaatgacttACAGCTGAAACAGAATACAGTTTAGCAGTTTGAGagttaagggctttgctcaaggacccaaacATGGCAGCTTGGCTATGCAGgaatttgaacacacaaccttccaatcagtagcccaaagccttaaccactgatcaACCACTTGCCAAGGGGGAAATTCAGCGTGGCCAAATCATGAcg

Function

symbol description
gas2l2 Enables actin filament binding activity; cytoskeletal anchor activity; and microtubule binding activity. Involved in several processes, including negative regulation of microtubule depolymerization; protein localization to microtubule plus-end; and regulation of cilium beat frequency involved in ciliary motility. Located in cytoplasm. Colocalizes with cytoskeleton. Implicated in primary ciliary dyskinesia 41.

GO: NA

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922404.2 True 3153 mRNA 0.49 6 13751910 13764085

Neighbor

gene id symbol gene type direction distance location
im:7138535 LOC108259897 coding upstream 87 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 38679 13707657 ~ 13713231 (+)
LOC113531401 NA coding upstream 48505 13695496 ~ 13703405 (+)
LOC113531575 spata22 coding upstream 120094 13523017 ~ 13631816 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding upstream 229184 13517470 ~ 13522726 (+)
pex12 pex12 coding downstream 42802 13806887 ~ 13810554 (+)
ncf1 ncf1 coding downstream 106566 13870651 ~ 13874909 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding downstream 112750 13876835 ~ 13889267 (+)
rad51d rad51d coding downstream 322557 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 984353 14748438 ~ 14756063 (+)
G386284 NA non-coding upstream 14225 13728187 ~ 13737685 (+)
G386246 NA non-coding upstream 93822 13655008 ~ 13658088 (+)
G386147 NA non-coding upstream 243905 13507398 ~ 13508005 (+)
G386136 NA non-coding upstream 274132 13477414 ~ 13477778 (+)
LOC117596226 NA non-coding upstream 388322 13351048 ~ 13363588 (+)
G386330 NA non-coding downstream 78258 13842343 ~ 13842646 (+)
G386342 NA non-coding downstream 90773 13854858 ~ 13855094 (+)
G386348 NA non-coding downstream 111853 13875938 ~ 13876193 (+)
G386350 NA non-coding downstream 126918 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 137899 13901984 ~ 13903993 (+)
zgc:63972 LOC108260458 other upstream 950993 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1916866 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2425855 11297974 ~ 11326055 (+)
G384593 NA other upstream 3372245 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3983874 9765740 ~ 9768036 (+)
G386294 NA other downstream 57703 13821788 ~ 13824055 (+)
G386325 NA other downstream 61765 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 1399299 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1480920 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1590275 15354360 ~ 15361054 (+)

Expression


Co-expression Network