pex12 (pex12)



Basic Information


Item Value
gene id pex12
gene name pex12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13806887 ~ 13810554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026922443.2
TGATGTAGCACGGGAACTTGACCTGTTTATACTAGGACGTTGGCACActgcattttgaattttggTGTGTAGAATGGCtgaatacacacatatttatagaTCATGCTTCTGTTAGTTCTACTAGAAACACAGATCTTTCTTTTGATCCGCTGTTTGTTTGATTAAAGTAGAATTATACTGTTAAATCCAGCACGATGGCGGAACGAGCAGCACATTTGACCACAGCAGCAGGTGAAGGCAGGCCCTCTATTTTTGAGGTTTTAGCTCAGGACTCTTTGATGAGTGCTGTTAAACCTGCACTTCAGCACGCCGTTAAAATCTTGGCTGAATCCAATCCTGCTCGTTATGGAATCCTCTGGAGGAAATTTGATGAGATCTACACCATCCTTGACCTCCTGCTGCAGCACCACTTCCTGCTGCGTACCAGCGCCTCCTTTTCTGAGAACTTCTACGGGCTAAAGCGCGTGGGCCCGGACGAGAGCAGACGAGCACATCGTGGCCTCGGTCGCAGGAGACATCTGCGATCCCTGCTTCTCCTAGTGCTCCTCCCGTACCTCCGAACCAAACTGGAGAAGGTGCTGGCTCGTCAGAGAGACGAGGACGACTTCTCGATACGGATGCCCCAGTCCCTTTCTCAGAAGATGTACAGAGCCTTCTTGGCTGCCTATCCTTATGTTTGTATGGCGTGGGAAGGTTGGAGTTTTTGCCATCAGTTGCTGTACATTTTTGGAAGTGCGCATACGCATTCGCCCCTTCTGTGGCTGGCGGGAGTCAAATTGTCCCATCTGACAGCTCAGGATATTCAAAACTTGCATCTCAAGCCAGCAGGGCGAGCACTGAGCTCTAGCCAAAGCTTTGGAGGACGGCTGCAGCACGTCTTTTCCACGGTGATTGGCAGCGTCGCCGTATCCCTCTCCGCCAGTCTCTCTATGGGAGTGTTCTTCCTGCAGTTTCTGGAGTGGTGGTACTCATCAGAGAACCAGACCACTATGAAGTCTCTCACCTCTCTCCCTACACCTCCACCCCCGCTTCACCTGGAGGACCAAGAGGCTGCACGGACGCGCAGCAAAGTGTGCCCGCTTTGCAGGAAAGTGCGCAGTAACGACACGGCCCTGGCCACCTCGGGCTACGTTTTCTGTTACCGCTGCATTTATACGTACGTGAAGACTAACCACCGGTGTCCGCTAACAGGCTATCCGTCTGAACTCCAGCACTTAATTAAGATCTATTCTCCAGAGGTGTAGCCCAAACTGATCATGTGACCACACATACTGGGAaactgactcttttttttttattgtgaatcAAATCATTTGAATCAACTCACCAAATGACTCACCAAatgactcctttttttttttttttaaataaactggaCAAAGTTTGTGATATGCTGACCACTGATTTGTCCTTCTTTGACTAATGAAACAGTTTAGTCAATAAAATACCTTTTTAATGAACTTTATTTACACATGCAATTCTTAGCCTAACTCAGACActacaaaaagtgaaaaacagtaaGCATCCCTGCTTTGTGCAGTGTATCTATTCACGATTATGAAGATTTCTGTCCATTTATCATGATAACTGATCATTTCCCATGATACACTCGCCTCACTTCCAGGAGTCGACTCAAAGAAGAGCCAaatcaaagagtcgactcgttaGCAAACGACACATCACTTGTTTGAAGCGTATTGACTTTAACATGCTTTTAATTTACCTTGAATTAGTGCTTTTCCAATGCAAAATACATTTTAGTGCTTTAAAAAAGTaccttgtgtctgtgtggggttttttgtaATAAAGTACATGGTTATAAAGTCAAA
>XM_026922444.2
ccagtctctagagtatcacagaatggtgcgaaaaaaacaaaaaacatctagcGAGCatcagttctgtgggcagaaactcCCACGGAATTGGTTTGacctgacaggaaggctacggtaactcacataaccactctttacaaccgtggtgagctgaaaagcatctcggaataTCTACTATGcagaaccttgaggtggatggattacaacagcagaagaccacatccaTGGGGGTTTGCTCTGATAGGAATCCATGGCAATCTTGGCTGAATCCAATCCTGCTCGTTATGGAATCCTCTGGAGGAAATTTGATGAGATCTACACCATCCTTGACCTCCTGCTGCAGCACCACTTCCTGCTGCGTACCAGCGCCTCCTTTTCTGAGAACTTCTACGGGCTAAAGCGCGTGGGCCCGGACGAGAGCAGACGAGCACATCGTGGCCTCGGTCGCAGGAGACATCTGCGATCCCTGCTTCTCCTAGTGCTCCTCCCGTACCTCCGAACCAAACTGGAGAAGGTGCTGGCTCGTCAGAGAGACGAGGACGACTTCTCGATACGGATGCCCCAGTCCCTTTCTCAGAAGATGTACAGAGCCTTCTTGGCTGCCTATCCTTATGTTTGTATGGCGTGGGAAGGTTGGAGTTTTTGCCATCAGTTGCTGTACATTTTTGGAAGTGCGCATACGCATTCGCCCCTTCTGTGGCTGGCGGGAGTCAAATTGTCCCATCTGACAGCTCAGGATATTCAAAACTTGCATCTCAAGCCAGCAGGGCGAGCACTGAGCTCTAGCCAAAGCTTTGGAGGACGGCTGCAGCACGTCTTTTCCACGGTGATTGGCAGCGTCGCCGTATCCCTCTCCGCCAGTCTCTCTATGGGAGTGTTCTTCCTGCAGTTTCTGGAGTGGTGGTACTCATCAGAGAACCAGACCACTATGAAGTCTCTCACCTCTCTCCCTACACCTCCACCCCCGCTTCACCTGGAGGACCAAGAGGCTGCACGGACGCGCAGCAAAGTGTGCCCGCTTTGCAGGAAAGTGCGCAGTAACGACACGGCCCTGGCCACCTCGGGCTACGTTTTCTGTTACCGCTGCATTTATACGTACGTGAAGACTAACCACCGGTGTCCGCTAACAGGCTATCCGTCTGAACTCCAGCACTTAATTAAGATCTATTCTCCAGAGGTGTAGCCCAAACTGATCATGTGACCACACATACTGGGAaactgactcttttttttttattgtgaatcAAATCATTTGAATCAACTCACCAAATGACTCACCAAatgactcctttttttttttttttaaataaactggaCAAAGTTTGTGATATGCTGACCACTGATTTGTCCTTCTTTGACTAATGAAACAGTTTAGTCAATAAAATACCTTTTTAATGAACTTTATTTACACATGCAATTCTTAGCCTAACTCAGACActacaaaaagtgaaaaacagtaaGCATCCCTGCTTTGTGCAGTGTATCTATTCACGATTATGAAGATTTCTGTCCATTTATCATGATAACTGATCATTTCCCATGATACACTCGCCTCACTTCCAGGAGTCGACTCAAAGAAGAGCCAaatcaaagagtcgactcgttaGCAAACGACACATCACTTGTTTGAAGCGTATTGACTTTAACATGCTTTTAATTTACCTTGAATTAGTGCTTTTCCAATGCAAAATACATTTTAGTGCTTTAAAAAAGTaccttgtgtctgtgtggggttttttgtaATAAAGTACATGGTTATAAAGTCAAA

Function


symbol description
pex12 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein import into peroxisome matrix and protein monoubiquitination. Predicted to act upstream of or within protein targeting to peroxisome. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be integral component of peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 3A. Orthologous to human PEX12 (peroxisomal biogenesis factor 12).

NR:

description
peroxisome assembly protein 12

GO:

id name namespace
GO:0006625 protein targeting to peroxisome biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K13345 PEX12, PAF3; peroxin-12

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026922443.2 True 1829 mRNA 0.46 3 13806887 13810554
XM_026922444.2 False 1768 mRNA 0.46 3 13807507 13810554

Neighbor


gene id symbol gene type direction distance location
LOC113531586 gas2l2 coding upstream 42802 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 55064 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 93656 13707657 ~ 13713231 (+)
LOC113531401 NA coding upstream 103482 13695496 ~ 13703405 (+)
LOC113531575 spata22 coding upstream 175071 13523017 ~ 13631816 (+)
ncf1 ncf1 coding downstream 60097 13870651 ~ 13874909 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding downstream 66281 13876835 ~ 13889267 (+)
rad51d rad51d coding downstream 276088 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 937884 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 981579 14792133 ~ 14795940 (+)
G386265 NA non-coding upstream 27748 13687263 ~ 13779139 (+)
G386284 NA non-coding upstream 69202 13728187 ~ 13737685 (+)
G386246 NA non-coding upstream 148799 13655008 ~ 13658088 (+)
G386147 NA non-coding upstream 298882 13507398 ~ 13508005 (+)
G386136 NA non-coding upstream 329109 13477414 ~ 13477778 (+)
G386330 NA non-coding downstream 31789 13842343 ~ 13842646 (+)
G386342 NA non-coding downstream 44304 13854858 ~ 13855094 (+)
G386348 NA non-coding downstream 65384 13875938 ~ 13876193 (+)
G386350 NA non-coding downstream 80449 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 91430 13901984 ~ 13903993 (+)
zgc:63972 LOC108260458 other upstream 1005970 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1971843 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2480832 11297974 ~ 11326055 (+)
G384593 NA other upstream 3427222 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 4038851 9765740 ~ 9768036 (+)
G386294 NA other downstream 11234 13821788 ~ 13824055 (+)
G386325 NA other downstream 15296 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 1352830 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1434451 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1543806 15354360 ~ 15361054 (+)

Expression



Co-expression Network