LOC113531654 (bco2,LOC108260375)


Basic Information

Item Value
gene id LOC113531654
gene name bco2,LOC108260375
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8868297 ~ 8885127 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922514.2
GTGGGTGATTGGAGGAGGCGGAGGATACACTGATGCATCCTTCAAAAGGATGAAGGCCACGAAACGAAGGTTGCCTTCCAAGGATCCTTGAAATCGAGACATCCTTTGATGACGCTTGATGGTGTGGTAGCCGAGATATACAGTCTTACTAGGACGCAGCGACCTTCtcattatctctctctatctctctctgtctctgtttatcCGCTCAGTCACCAGCAGCGCATCATCTTTCAACATGTCACATGTGAAGCCTCAACCAGCCGttttgaacAATAAGCCAAAAAATACCTTCAAGGAGCGGCATGGTCTTCAGGATATTGCCCAACTTGTGCAGAGCGTGGAGGAGACTCCAGAGCCCATCCCTACCACCGTCAAAGGCACAATACCTACATGGATCCATGGAAATCTTCTTCGCAATGGCCCTGGAAAGTTTGAGTTCGGAAATCAACACTTCAATCACTGGTTTGATGGAATGGCCATGATGCACTGCTTTCATATTGCTGAAGGTCAGGTGACCTACTGGAGTCGCTTCCTGCGCAGTGACTCCTACAAGCAGAACAGTGAGATGAATCGAATCGTGATATCTGAGTTTGGCACTCTTGCTCTCCCCGACCCATGCAAGAATATCTTTCAGCGCTTCCTATCCCGTTTTGAGAGGATGAAGCCCACAGACAACGCTAATGTGAGCTTTGTGAAATACAAAGGTGACTACTATGTCAGCACGGAGACAAACTTTATGCACAAAATTGATCCGGACACTCTAGAAACAAAAGAGAAGGTGGACTGGACTAAGTTCATTGCTGTTAATGGTGCAACTGCCCACCCCCATATTGACCCAGACGGTACGGTCTACAACATGGGCAACTCCTACGGCAGGAAAGGAGCTTTATACAACATTATCAGAGTGCCTCCAAAGAATGAAGACCCTGATGAAACACTGCATGGGGCGAATGTGCTATGCTCTATTtctcctgctgaaaaaaacaagcctTCCTATTACCATAGCTTtgcCATGTCAGAGAACTATGTGGTGTTCATTGAACAGCCCATAAAGATGGATCTGCTTAAGATAGTGACATCTAGGATGAGAGGGAAAGGCATAAATGACTGTATCTACTGGGACGCAAAACAAGAGACTGTCTTCCATGTTATAAACAAACATACTGGAAAGGTGAATCCAGTGAAGTACCACACCAAGGCTCTATCCACCTTCCATCAGATCAACGCATTTGAGGAGGATGGCTTCCTCATAATGGATATGTGCTGCTCAGATGATGGCCAGGCCCTTAATATCTACTTTCTTCAGAACCTACGCAAGTCAGGAGAAGCACTGGATGAGgtataCAACAGCTTATCTATGTCATTGCCCCGCCGCTTTGTTCTGCCTCTGTGCATTACCAATGATACTCCACTGAACCAGAACCTCAACACACGGCCCAACAGCACTGCTTCTGCGGTCTGCCTCAGCAAAGATAAGGTGTTCTGCATGTCTGAAGATCTGCATGACAATGAACTGCTGGATTATGGTGGTTTGGACTTCCCTCACATTCACTACGACAGGTACAACACCAAACCATACCGCTATTTCTATGGCTGTGGCTTTGGCCACCTTGTGGGAGACTCGCTGATCAAGATGGACCTGGAGAGTAAAAAGCTCAAGGCATGGTACCAGCCAGGCTTCTATCCATCTGAGCCCGTGTTTGTCCCCTCACCTAAtgcagaggaagaggatgatggAGCCATCCTATCTGTTGTCCTCACACCCACTAAGGATAAAGGCACATTCCTGCTGGTTCTGGATGCTAAGACGTTTGAGGAACTGGGAAGAGCTGAAGTGCCTGTTAACATTCCATACGGCTTCCACGGAACCTTTAACTCCTCAGTATAGAACAACTCTTAATCTAATGCGTTGGCACAACAAGAAGGCCCAACTCTGGCCAAGTTTATAAGTCACTTCAattaaaagagatttttttttgctattggCTAGCATGGTTTGTGTCCATAATTCTAACtgggccacatcagcatttttgtcaGATTGACACAATCACtgttctagttcatcccaaaggtgttcagtggggttgtggTCAGGATTCTATTGGGCCtgctttgtgcacatgggcaTTGTCATAGTGGGCCAGGTTTAagccccttaattccagtgtGCTACAGGTCTAGCTAGTGTGATAATGCTAAGCAGTATTGTACAAGGGACGAATTTCAGTATATTGTTTTGAAAGTTCACGCAGGCTGAATGAAACGAGGCAACGGGCCTTTAGTTTGACACGTGCCTTGGAGGGTAGGGGCACTGagaatcaatacaaagttacaAAATCAAAGTTACTCTCACTGAtgacctttatcctatgatgaaacattttttgGCAGTGGTCTTTTCCAGAATTATTCCACTACAGTCCACAGGGCATGAGAACTCACTAAATTctgatgattatgaaaatattgtaaataatatgcTACGGTCATTGCTGTTACTAGATACCAACCCAACTGACCACCTACGGTAGATTTGGGACTGAAATATTACACATcaagaaatattgaaatattagaGTCttcttccataaacgttaaataaacattctgCTTTCACAAA

Function

symbol description
bco2 Enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen. Involved in carotene catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion.

GO: NA

KEGG:

id description
K10252 BCDO2; beta,beta-carotene 9',10'-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922514.2 True 2626 mRNA 0.45 12 8868297 8885127

Neighbor

gene id symbol gene type direction distance location
LOC113531529 bco2,LOC108260375 coding upstream 1791 8841497 ~ 8866506 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding upstream 59414 8794084 ~ 8808883 (+)
adamts8a LOC108259710,LOC107598150 coding upstream 74462 8778274 ~ 8793835 (+)
phldb1a LOC108260305 coding upstream 317763 8495718 ~ 8550534 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding upstream 373947 8481772 ~ 8494350 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding downstream 246762 9131889 ~ 9154326 (+)
tecta tecta,LOC107665015,LOC106603728 coding downstream 273901 9159028 ~ 9185282 (+)
usp2b usp2b,usp2,LOC108260071,LOC108431020,LOC107665042,LOC107740817,LOC107731051 coding downstream 301533 9186660 ~ 9232642 (+)
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding downstream 370757 9255884 ~ 9283778 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding downstream 466413 9351540 ~ 9358888 (+)
G383609 NA non-coding upstream 130223 8737873 ~ 8738074 (+)
LOC117596219 NA non-coding upstream 252942 8614303 ~ 8615355 (+)
G383448 NA non-coding upstream 311454 8554596 ~ 8556843 (+)
G383443 NA non-coding upstream 359915 8507216 ~ 8508382 (+)
G383399 NA non-coding upstream 483794 8384245 ~ 8384503 (+)
LOC113531289 NA non-coding downstream 65665 8950792 ~ 8953176 (+)
LOC113531287 NA non-coding downstream 69020 8954147 ~ 8964359 (+)
G383849 NA non-coding downstream 239296 9124423 ~ 9124758 (+)
G383911 NA non-coding downstream 307338 9192465 ~ 9192780 (+)
G383947 NA non-coding downstream 427238 9312365 ~ 9314081 (+)
G383625 LOC108260351 other upstream 93163 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 275916 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 303040 8558826 ~ 8565257 (+)
G383217 NA other upstream 655190 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 707040 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 880613 9765740 ~ 9768036 (+)
G384593 NA other downstream 1493086 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 2412847 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2832891 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3905774 12790901 ~ 12800917 (+)

Expression


Co-expression Network