ncf1 (ncf1)


Basic Information

Item Value
gene id ncf1
gene name ncf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13870651 ~ 13874909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300461.1
AAGTGACTCTTATAAATACCAGCATGCTactttttcttctattttcctGCTGTGAGTCTTGTCAGTGTTCAGGATGGCAGAAACGTTCGTGCGACACGTAGAGCTTTTGGGCTTTGAGAAAAGGTTCTATCCAAGCCAGCATTATGTGTACATGATCATGGTGAAATGGAGCGACCAGTCGGAGAAACTGATCTACAGAAAATACCCAGAAATCCATACTTTCCATAAAGCTCTGAAGGAGATGTTCCCGATCGAGGCAGGTGACATTGATCCTAAAGATCGTATCCTTCCTAAATTGCCAGCTCCAAAATGGCTTGACAGCCAGAAGTCAACTGAGACTAGACAGGAAACTCTGACAGAATACTTTCAGTCTCTGCTCAATCTGCCTTCAAAGATCACCCACTGTCAGCTAGTCAGAAACTTCTTTAAAGTACGGCCAGATGATGAGAGTCCACCAGCTCCACATCCATATAAGCGGAACGAGACCTTTGTCACGTCCAGGGATAGAGCAAGGACTGCCACCTCTGaaaTCACAGGTCCAATCATGCTGGAAACCTATAGAGTGATTGCAGATTACAGCAAAACCACAAAATATGAGCTCAACCTGAAGGCAGGAGATTCAGTGGACATTGTGGAGAAGAGTTCCAATGgtTGGTGGTTCTGTCAGTGTGAAACACATAGAGGATGGGCTCCAGCCTCCTATCTAGAACCACTAGATGGACCTGATGAGTCTGAGGAGCCGGAACCCAACTATGCAGGAGAGCTGTACAAAACCACAAAAGCCTACAAAGCGGTGGAGGACGATGAGATCAGCCTGGAGGTTGGAGAAACCATTGAGGTCATCCATAAGCTTCTTGATGGCTGGTGGGTGGTCAGgaaaggagaggagacaGGCTACTATCCCTCCATGTTCCTTTGGAGTACCGGGGAAAGGAAGGAAGTAGAGGCTGAAAGGAGCAGTGTGAACAGGAACACCCCACCACCCAGGAGATCGACTATACGCAACGCCCAGAGCATCCATGCCAAAGGTCGCCAACGAATCAGCCAGGACTCATATCGCAGACAGAGTCGCAAATTCTTACAGCAGCGAGGAAGACTCGTGTCCCAGCCGAGGAAAAACTCCAAATCCACAGTGGAGGAAAGTCCGGaaGACACTGCAAAAGAAGCTCCCAACAAAGAAGAGGTAAAGAAAACCCCTGCCATACCTCCTAGGCCTAGCCAGGAGCTCATTATGGAGCGCTGCACGGAGAATACACGCAAAAGAATCAGCATCCACGCCAACTGAGGTAGACCCGACACCAACCTAAACGCTCAGCACTGCACCAGAATGAAGAACGCCCAGCTTGATTCGGTCATTATTGCAGCAATTGCATGAAATCTTTCATCGAAACTTGAATGGCATGAAACAGTAGGACAGGCATAGTTTCATTTCTCTGTTCAAGCACATCTGATTTATATTCCACATTTGTCAATGTCACAGCAGGCCTGGCAGCTTAAGAAATGTTAGCAAAGCCCACTTCTTCACTTCTTCACTTCTGTGCTCTATCTCTGTAACCAAAGAGGATCGTAGCAGTTTTAAGCACTGTGTAAGAATGTtatatgactgtatatgtaGTTTTCAATAAGCTatagtgttgtttttgtttattatactttaagaa
>XM_034300462.1
AAGTGACTCTTATAAATACCAGCATGCTactttttcttctattttcctGCTGTGAGTCTTGTCAGTGTTCAGGATGGCAGAAACGTTCGTGCGACACGTAGAGCTTTTGGGCTTTGAGAAAAGGTTCTATCCAAGCCAGCATTATGTGTACATGATCATGGTGAAATGGAGCGACCAGTCGGAGAAACTGATCTACAGAAAATACCCAGAAATCCATACTTTCCATAAAGCTCTGAAGGAGATGTTCCCGATCGAGGCAGGTGACATTGATCCTAAAGATCGTATCCTTCCTAAATTGCCAGCTCCAAAATGGCTTGACAGCCAGAAGTCAACTGAGACTAGACAGGAAACTCTGACAGAATACTTTCAGTCTCTGCTCAATCTGCCTTCAAAGATCACCCACTGTCAGCTAGTCAGAAACTTCTTTAAAGTACGGCCAGATGATGAGAGTCCACCAGCTCCACATCCATATAAGCGGAACGAGACCTTTGTCACGTCCAGGGATAGAGCAAGGACTGCCACCTCTGaaaTCACAGGTCCAATCATGCTGGAAACCTATAGAGTGATTGCAGATTACAGCAAAACCACAAAATATGAGCTCAACCTGAAGGCAGGAGATTCAGTGGACATTGTGGAGAAGAGTTCCAATGgtTGGTGGTTCTGTCAGTGTGAAACACATAGAGGATGGGCTCCAGCCTCCTATCTAGAACCACTAGATGGACCTGATGAGTCTGAGGAGCCGGAACCCAACTATGCAGGAGAGCTGTACAAAACCACAAAAGCCTACAAAGCGGTGGAGGACGATGAGATCAGCCTGGAGGTTGGAGAAACCATTGAGGTCATCCATAAGCTTCTTGATGGCTGGTGGGTGGTCAGgaaaggagaggagacaGGCTACTATCCCTCCATGTTCCTTTGGAGTACCGGGGAAAGGAAGGAAGTAGAGGCTGAAAGGAGCAGTGTGAACAGGAACACCCCACCACCCAGGAGATCGACTATACGCAACGCCCAGAGCATCCATGCCAAAGGTCGCCAACGAATCAGCCAGGACTCATATCGCAGACAGAGTCGCAAATTCTTACAGCAGCGAGGAAGACTCGTGTCCCAGCCGAGGAAAAACTCCAAATCCACAGTGGAGGAAAGTCCGGACACTGCAAAAGAAGCTCCCAACAAAGAAGAGGTAAAGAAAACCCCTGCCATACCTCCTAGGCCTAGCCAGGAGCTCATTATGGAGCGCTGCACGGAGAATACACGCAAAAGAATCAGCATCCACGCCAACTGAGGTAGACCCGACACCAACCTAAACGCTCAGCACTGCACCAGAATGAAGAACGCCCAGCTTGATTCGGTCATTATTGCAGCAATTGCATGAAATCTTTCATCGAAACTTGAATGGCATGAAACAGTAGGACAGGCATAGTTTCATTTCTCTGTTCAAGCACATCTGATTTATATTCCACATTTGTCAATGTCACAGCAGGCCTGGCAGCTTAAGAAATGTTAGCAAAGCCCACTTCTTCACTTCTTCACTTCTGTGCTCTATCTCTGTAACCAAAGAGGATCGTAGCAGTTTTAAGCACTGTGTAAGAATGTtatatgactgtatatgtaGTTTTCAATAAGCTatagtgttgtttttgtttattatactttaagaaaa

Function

symbol description
ncf1 Predicted to enable superoxide-generating NADPH oxidase activator activity. Acts upstream of or within defense response to fungus and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytoplasm. Is expressed in cardiovascular system; extension; macrophage; and myeloid leukocyte. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome; autosomal recessive chronic granulomatous disease cytochrome b-positive type I; and chronic granulomatous disease. Orthologous to human NCF1 (neutrophil cytosolic factor 1).

NR:

description
neutrophil cytosolic factor 1-like

GO:

id name namespace
GO:0045730 respiratory burst biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0007154 cell communication biological_process
GO:0050832 defense response to fungus biological_process
GO:0005737 cytoplasm cellular_component
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K08011 NCF1, P47PHOX; neutrophil cytosolic factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300461.1 True 1661 mRNA 0.46 11 13870651 13874907
XM_034300462.1 False 1660 mRNA 0.46 11 13870651 13874909

Neighbor

gene id symbol gene type direction distance location
pex12 pex12 coding upstream 60097 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 106566 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 118828 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 157420 13707657 ~ 13713231 (+)
LOC113531401 NA coding upstream 167246 13695496 ~ 13703405 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding downstream 1926 13876835 ~ 13889267 (+)
rad51d rad51d coding downstream 211733 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 873529 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 917224 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 936193 14811102 ~ 14855941 (+)
G386342 NA non-coding upstream 15557 13854858 ~ 13855094 (+)
G386330 NA non-coding upstream 28005 13842343 ~ 13842646 (+)
G386265 NA non-coding upstream 91512 13687263 ~ 13779139 (+)
G386284 NA non-coding upstream 132966 13728187 ~ 13737685 (+)
G386246 NA non-coding upstream 212563 13655008 ~ 13658088 (+)
G386348 NA non-coding downstream 1029 13875938 ~ 13876193 (+)
G386350 NA non-coding downstream 16094 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 27075 13901984 ~ 13903993 (+)
G386359 NA non-coding downstream 48911 13923820 ~ 13924243 (+)
G386361 NA non-coding downstream 51479 13926388 ~ 13926592 (+)
G386325 NA other upstream 42503 13825850 ~ 13828148 (+)
G386294 NA other upstream 46596 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1069734 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2035607 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2544596 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1288475 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1370096 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1479451 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1486449 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1932640 15807549 ~ 15859905 (+)

Expression


Co-expression Network