arpc5lb (arpc5l,arpc5la,LOC107753090,LOC107571143)


Basic Information

Item Value
gene id arpc5lb
gene name arpc5l,arpc5la,LOC107753090,LOC107571143
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10367257 ~ 10378138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300544.1
CCTCTCGAGGCAAactcttgtttgtttttagccaCAAGTAGCGTGATGGAGGCAGCTTGACTTCCCCCATGCGTCTGAGACCTCTGGAGTGACCTGCATTAAACGGGGTTCCAAGTTTTATCTGTTGTTGCGTTTAAAACTTGATCCATTTTAAGGCGTAAAGTCGATGGCGAAGAACACACTGTCCTCCCGCTTCAGGAAGGTGGACGTGGACGAGTTCGATGAGAATCGCTTTGTAGAGGAGCAGCAGGACGAAGCGGCAGAACAGCAAGGACCAGATACAGCTGAGGTGGACGATCTTATCCGACATGGAGACATGATTGCAGCTTTCCAAGTTGCACTAAGAAACCCCCCAATCAACAGCAAGAATCCAGCAATAAAGGAGAAAGCACAGGCAGTTGTGTTGAAGGTGCTGATGTCATTTAGGAGCAGCGACATAGAGCCTGCCGTCAAATCCCTGGACAAGAATGGCATCGATCTGCTCATGAAGTACATCTACAGAGGATTTGAGAAGCCTTCAGACAACAGCAGTGCCATTTTGCTGCAGTGGCATGaaaagGCCTTTGCTGTTGGAGGACTTGGCTCCATCATCCGAGTTATGACATCCAGAAAGACCATATGACAGTGAATCACAAACACTGCCTCAGCAAAGACTAGTTCTCTTACAGAAGggaaaaatattgttattgatTCATTCTTGACAGGAGAAGAAGTCTGTGAATTATTTTAAGTGGTGTAGAGGGCTGTGCTAAAACTGAGAACTAAGCTTTCTTTTCTTGGGTAGAAATAATGTGAAAgtactgtgtgtgcgtgcgtgtgtgtgcgtgcgtgtgtgtgcgtgtc
>XM_034300545.1
TTGCGCCTCTCGAGGCAAactcttgtttgtttttagccaCAAGTAGCGTGATGGAGGCAGCTTGACTTCCCCCATGCGTCTGAGACCTCTGGAGTGACCTGCATTAAACGGGGTTCCAAGTTTTATCTGTTGTTGCGTTTAAAACTTGATCCATTTTAAGGCGTAAAGTCGATGGCGAAGAACACACTGTCCTCCCGCTTCAGGAAGGTGGACGTGGACGAGTTCGATGAGAATCGCTTTGTAGAGGAGCAGCAGGACGAAGCGGCAGAACAGCAAGGACCAGATACAGCTGAGGTGGACGATCTTATCCGACATGGAGACATGATTGCAGCTTTCCAAGTTGCACTAAGAAACCCCCCAATCAACAGCAAGAATCCAGCAATAAAGGAGAAAGCACAGGCAGTTGTGTTGAAGGTGCTGATGTCATTTAGGAGCAGCGACATAGAGCCTGCCGTCAAATCCCTGGACAAGAATGGCATCGATCTGCTCATGAAGTACATCTACAGAGGATTTGAGAAGCCTTCAGACAACAGCAGTGCCATTTTGCTGCAGTGGCATGaaaagTTGTTCTAGGTGGGGGGGAAAAGACAGGAAGCCATCATTGCTTCACAGATGCTAGAATTCCGTGATATCTCCTTAACAATCAATCCAAAGTTTAGGCAAATAGATTCAGCAAAGTTCCTTGAATCACTCAGCAGGAACACTGCTCCATCGATGACAAATTCAACTACATCTGACAAAAGAAGCTTACTTGATCAGTGTCAAGCACAGATGAAGCAGACTGGCCACAAAGGTCTGGAGAGGCCAGTATCAAACAGTTGGCTGGACAGTTTCATTTGGACAAGGTGAACACTTTTGAGGGATTCAGGGATTACAAAGAAACCAAAGACATTTCAGAAAACTTGGCCCTGTTACTGAATATCTTAAACATAATTCCTGTCAGCAGTGCTGAGTGTGAATGTATGGATTTAGTTTAATGAACACAGTTCATCCTCTTCACTGCAAGAGAGAATGTCTCATCACTCATGTTTGTGAATTTGAATGGCCCACCTCTCAACAAGTGGAAGCTGAAAAATTACATTAGCTCAAGGACGACATGCAAAATCGTGAAACGttactgcaacacagaacagcaAACAGTGCAACGCACGACACACAAACTCGACCTGCAGCACAACCAGGGAACCAACAGGTGGCACTATGAGAACTATTGGCTGACTAGTGTGATATTTTGTCACTGTGAATAGTTTGAACAGTCTTGTAAATAATATTGACATTTGCTTTGATTTTCTCTATCTGCAATGATAACATCTGAAAtccaatatataaaataaagtacatttgACTA
>XM_034300546.1
tgcAGAATGGGGTACTCCAGAACCAGGGATAGGAACCTGTGGTGTACATGATATTCCTCTAAATTCTGTTGTGTCATGTCTCATAAAGGTTTTTAGAGGAAAAAGTAACTATGGAAGTAACTACTAGTCATGGTCGCTGCGGATCCAGAATGTATTCTggtaacactgggtgcaagCAGGTTCCTTAACCTGCTGCAGTGTACTGGAGACATGATTGCAGCTTTCCAAGTTGCACTAAGAAACCCCCCAATCAACAGCAAGAATCCAGCAATAAAGGAGAAAGCACAGGCAGTTGTGTTGAAGGTGCTGATGTCATTTAGGAGCAGCGACATAGAGCCTGCCGTCAAATCCCTGGACAAGAATGGCATCGATCTGCTCATGAAGTACATCTACAGAGGATTTGAGAAGCCTTCAGACAACAGCAGTGCCATTTTGCTGCAGTGGCATGaaaagGCCTTTGCTGTTGGAGGACTTGGCTCCATCATCCGAGTTATGACATCCAGAAAGACCATATGACAGTGAATCACAAACACTGCCTCAGCAAAGACTAGTTCTCTTACAGAAGggaaaaatattgttattgatTCATTCTTGACAGGAGAAGAAGTCTGTGAATTATTTTAAGTGGTGTAGAGGGCTGTGCTAAAACTGAGAACTAAGCTTTCTTTTCTTGGGTAGAAATAATGTGAAAgtactgtgtgtgcgtgcgtgtgtgtgcgtgcgtgtgtgtgcgtgtc

Function

symbol description
arpc5la Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).
arpc5l Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion.

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like protein

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300544.1 False 843 mRNA 0.47 4 10367262 10378138
XM_034300545.1 True 1348 mRNA 0.44 4 10367257 10376469
XM_034300546.1 False 737 mRNA 0.44 4 10370497 10378138

Neighbor

gene id symbol gene type direction distance location
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 25753 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 82706 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 105512 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 144225 10211942 ~ 10223032 (+)
hspb15 NA coding upstream 181096 10184088 ~ 10186161 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 407419 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 647730 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 840920 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 1083565 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 1264985 11643123 ~ 11681971 (+)
G384608 NA non-coding upstream 5767 10361255 ~ 10361490 (+)
G384607 NA non-coding upstream 8759 10358270 ~ 10358498 (+)
G384606 NA non-coding upstream 8994 10357659 ~ 10358263 (+)
G384583 NA non-coding upstream 60349 10306674 ~ 10306908 (+)
G384466 NA non-coding upstream 237726 10129243 ~ 10129531 (+)
G384592 NA non-coding downstream 2432 10380570 ~ 10388271 (+)
LOC113531306 NA non-coding downstream 103996 10482134 ~ 10490299 (+)
G384700 NA non-coding downstream 181867 10560005 ~ 10560651 (+)
G384705 NA non-coding downstream 188166 10566304 ~ 10566511 (+)
G384725 NA non-coding downstream 214138 10592276 ~ 10592482 (+)
G384178 ier5l,LOC108228905 other upstream 599221 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1592123 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1774876 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1802000 8558826 ~ 8565257 (+)
G383217 NA other upstream 2154150 8182391 ~ 8213107 (+)
G384593 NA other downstream 75 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 919836 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1339880 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2412763 12790901 ~ 12800917 (+)
G386294 NA other downstream 3443650 13821788 ~ 13824055 (+)

Expression


Co-expression Network