gusb (gusb,LOC107591494)


Basic Information

Item Value
gene id gusb
gene name gusb,LOC107591494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7224710 ~ 7238694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300571.1
AAGGTGGTCATGTGATGCGCGTTATGTGAAAAGTAGCGGAAGTAAAGGGGAAAACGCACAGCTAAGCAGGCGAAGCACTGCTCGGAGCTTCTGTGCATCACTACAGGCACGAAGTGTTGACAATGTGGTTGGTAAATTGTGTGTGTCTTGCTGCTGTGTGGAGACTGTGTGAGTCAGTGGACAGGGGCATGCTTTTCCCTCAGGAGTCTCTGTCGCGGGAGGTGAAGGAGCTGAACGGGCTGTGGACATTCAGAGCTGATTTCTCTCCCAACAGGAACCAGGGTTTCGACCAGATGTGGTTTAAACGACCGTTAGCAGAGACCGGTCCTGTCATTGACATGCCAGTACCCTCCAGCTTTAATGATATAACTCAGAACCCTAAACTGAGAGATTTCATCGGCTGGGTGTGGTACGAGAAGGAGGCGTGGATCCCTCAGCGCTGGCTTCAGAACAAGGATACAAGGATTATGCTCAGAGTTGGAAGTGCTCACTACTATGCAGTGGTTTGGGTGAACGGGTTCCAGGTGATGGAGCATGAGGGCGGCCATCTTCCCTTTGAAGCGAATATTAGTGATGTGCTCCGGATGGATACAAGTATGCCATGTCGTATCACCATCGCTGTTAATAACACCCTGAACCTGCACACTCTTCCACCGGGAACCATCCAGTACATGAACGATCCTACCAAATATCCTGCAGGTTACTTTGTTCAGGAGACCAactttgatttctttaactATGCGGGAATACATCGCTCTGTGTTACTGTACACAACTCCGAAGACATACATCGATGACATCACTGTGACTACTTCCTTCTCAGACAGTACTGgGTTTGTGAATTACAATGTAACACCAGGGGACAGTGCCAAGTCCTCCGTAAAGGTCACTCTTACGGATAAAGAAGGTCGGTGTGTGGCCACTTCTGATGGAGCCCTTGGTGTTCTCAAAGTGCCTGAAGTCAACCTGTGGTGGCCTTATCTGATGCACCAGAACCCAGGGTACCTGTACTCCATGGAGGTTAAGCTCACAGCGGAGAGCGGTGATGTAGATTACTATACACTGCCGGTGGGTATTCGCACCGTCAACGTCACCAGTACACAGTTCCTCATCAACAGCAAGCCCTTCTACTTCCACGGAGTCAATAAACACGAGGACGCAGATATTCGAGGAAAGGGCTTTGACTGGCCTCTCATCGTGAAAGATTTCAACCTGATGAAGTGGATGGGCGCAAACTCGTTCCGCACTAGTCACTACCCGTATGCTGAGGAGATCCTGCAGATGGCTGACCGCCATGGCATCGTGGTTATAGACGAGTGCCCCGGAGTGGGCATCAAAGACAAAGTCAGCTTTGATAATACTTCACTGGCCCATCACCTTGTCGTCATGAAGGAGCTGGTGGGGCGGGATAAGAATCATCCCTCTGTGGTCATGTGGTCTGTAGCCAATGAGCCGGCAGCTGAGTTGCCTCCAGCAGGCTTCTATTTCAAACAACTGATAACGTACACAAAATCTTTGGATCCAACGCGTCCGGTGACCTTCATCACAAACAGTAACTATGCCAAAGACCAAGGAGCTCCCTACGTAGATGTGATCTGTGTGAACAGCTACTTCTCCTGGTACCATGACTCTGGGCATCTGGAGGTCATCTCCATCCAGCTCCACACTCAGTTTGACAACTGGTATAGAAAATACAAGAAACCCATCATACAGAGCGAGTACGGGGCAGACGCTGTAGCAGGCCTACACACTgATCCCCCAACTATGTTTACTGAGGAGTACCAGAAAACAGTCCTGCAGGACTACCACAAAGTGTTTGATCAGAAGAGGAAGGAGTTTGTTGTGGGAGAGCTCATCTGGAACTTTGCTGACTTCTTGACAGCTCAGGgCATCACTCGTGTGGTTGGCAACAAGAAGGGAATGTTCACTCGGCAGCGGCAACCCAAAGCAGGCGCTTTCCTTCTGAAAGATCGCTACTGGAGGATCGCCAATGAGACAGGTGTCCTGCCTACATGGGCCAGATACCCCTGCCTGTGAAACCTCCACCCTGGCtgccatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagggagagagggagagaggagagaggagagagactaCAAATAAGAGCTGTGAAATTGAGTCAAAATATTTCTAAGACTCGTGCCTCATGTCAGCCAGTTTTTATGATTCTGGCAGTGTAATTCAGGGaggatttaatttttaatgtcatttttaatacttataaACAGCAATAAACCACTTCATCTTACTGCGCACAAATCAGCATGAATGTCAGGATGTTGCAGGTATATGAGTTTAACAACACTAGTACCACTCAAATAGTGGCGCAGTACCCAAGCTGGAATGTGCAAAAGTAGATGCACTGGATTTTCTTCTCACTGCCTCTTCGGGTACCAAAATCCAAGTTCAGTTTCCTAACTTGCAATGAACTTTCATCAGCGCAGCATAAACAAAGAGCATGACTAGTTTTCTCACGCTGATCTGAGACCAGCATTTCAGTTTCTCctttaatgtttcagatttaCATTTGTCTATCAGTGTTAAAATAAGACTTTATATCTGTTAAGGCTGTGAACAGtgttatttcatttcagtttgggAACACAATGGAGAGCATGTCTGTATGTCTTCAATCATAATAAGCATTccaattctttttttgttttcgtGACATTCCAGACATGACCTGCATTCTGTTCTTGTTCACGACCCTCAGAGCAGCTCCTTcggcttttttaaaaacacacaaataaatgcaaacatacaaatatttttcttatgtTAGATTTGACATTGATGTTAGTGTGAGGAAACATCGCAACAAGTTTCATCACCTGTGGAAAAGAGATTATACACCATTATTTTCATATGCACATATACAGTAAtttacgttaaaaaaaaaaaatttaagcgTACACATGCTGCCTTAATTTGTGCTTGGACTCTTCCAACTTGCACACATTCCTGGCTAACAAGTGAACACATAACCCTGTGCTACTGTATATCACAACACTGGTTTACGAATGAGTTACTTGATAAGCTTGCTCTTTGGCAGTTGTTTATAGAGTGTGAGGAGGTTATGATTTGTTTCAGATTGTCTTTTGAATGGTGGACCAGGATTTACTAGCAGACCTGCTTTTATGTGACCATTTGATGAAATGACTGCATTAGTATATCATTATTAAATGGAAATGATAAAGTTGGCCATGATTAGCAGATATGTTTGGGAACAATTCAATGCAAAAAAGGGCAAGACCTTTAAAGCCCACTGACAATCTGATGTTCTCGCTGTTTATGTTTCTACCTGCAGCTCTTTGCCATTCTGTGTATGTTACAtacatggctttttttttacattcagttCACATTTGGATTTCATTCTTAAAGTTGGCTTTAATTTACCTTTGGATATATGCAGAATGTTGGAGTATGTTCTGTATGTACAACTTGtagagctttttttccccctttcaaTAAAGATCGATTTCCTATA

Function

symbol description
gusb Predicted to enable beta-glucuronidase activity and carbohydrate binding activity. Predicted to be involved in glucuronoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in Sly syndrome. Orthologous to human GUSB (glucuronidase beta).

NR:

description
PREDICTED: beta-glucuronidase

GO: NA

KEGG:

id description
K01195 uidA, GUSB; beta-glucuronidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300571.1 True 3580 mRNA 0.45 12 7224710 7238694

Neighbor

gene id symbol gene type direction distance location
ca4a LOC108259876 coding upstream 44813 7163299 ~ 7179897 (+)
mtmr4 mtmr4 coding upstream 74944 7080107 ~ 7149766 (+)
LOC113531112 tspoap1 coding upstream 292791 6831684 ~ 6931919 (+)
hspb1 hspb1 coding upstream 440322 6777992 ~ 6784388 (+)
srrm3 srrm3 coding upstream 450803 6691036 ~ 6773907 (+)
rplp0 rplp0,LOC107654305 coding downstream 36860 7275554 ~ 7279408 (+)
LOC113531674 NA coding downstream 38151 7276845 ~ 7276973 (+)
LOC113531673 NA coding downstream 38905 7277599 ~ 7277727 (+)
LOC113531518 rab35,LOC108259874,LOC108429727,LOC103036303,LOC105902527 coding downstream 40952 7279646 ~ 7291137 (+)
cita cit,LOC108429728 coding downstream 56535 7295229 ~ 7383384 (+)
LOC117596228 NA non-coding upstream 67481 7154594 ~ 7157229 (+)
G382606 NA non-coding upstream 115001 7108726 ~ 7109709 (+)
G382380 NA non-coding upstream 156949 7066813 ~ 7067761 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding upstream 269782 6951719 ~ 6954928 (+)
LOC117596241 NA non-coding upstream 409335 6811118 ~ 6815375 (+)
G382646 NA non-coding downstream 147816 7386510 ~ 7388236 (+)
G382667 LOC108260439 non-coding downstream 210217 7448911 ~ 7450445 (+)
G382686 NA non-coding downstream 259072 7497766 ~ 7500585 (+)
G382929 NA non-coding downstream 407442 7646136 ~ 7646471 (+)
G382931 NA non-coding downstream 410615 7649309 ~ 7649523 (+)
LOC113531592 rnf43 other upstream 166511 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 841025 6380662 ~ 6383685 (+)
G381893 NA other upstream 982013 6223168 ~ 6242697 (+)
G381835 NA other upstream 1043797 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 1172354 5990022 ~ 6052356 (+)
LOC113531088 NA other downstream 21559 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 299664 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 903889 8142583 ~ 8161257 (+)
G383217 NA other downstream 943697 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1320132 8558826 ~ 8565257 (+)

Expression


Co-expression Network