brwd3 (brwd3,LOC107672566,LOC107680390)


Basic Information

Item Value
gene id brwd3
gene name brwd3,LOC107672566,LOC107680390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17549593 ~ 17573276 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300655.1
agccccAGCCGAAAAGAGCCGACTAACCCCAGGCTACCTGAAGCTAAAGCGCCCGAACCGGGGCCATGGCGTCGGAACCGTGTTCACAGATTGAAGCCGAACTCTATTTCCTGATTGTCAGATTTCTTCAATCGGGACCGTGCAAAAAATCGGCACAgACTctgcaggaggagctggaagagTATGAGATCATCCCGGAGCGCTGGAGCTGGGACGGAAAACGGTACAAGAGAAACTTCCAGGATTGGgtggcaCTGAATCAGCACATCCCAGCAGATTACctgttgcgtgtgtgtgagcagctgTGTCCGTTGGTGGACGCACACGTCCCTCCGAGCGTCCCCGGACTCCGCAGTCTGCTGGGGAGCGGCCGACAGTCTCTACTGCGTACTGCcaagaGTTCTTCTCACACAGTATGGACGGGTTCTGCTGTAGCTGCTCTGCACAGGGGGCGGCCCCCCGAACCGCCAATCAACTTCCCCAAACCGCCAAATATTGTGTCAATCATGGGCGGTCGCCAGGCAACCGGGGTGGCCCGCTTGGGTCACGCCCTCCCATCCTGCACCTACCAGCACATGAAGATGCACAGGAGGATTCTGGGACACCTGTCCTCGGTGTACTGCGTGGCCTTCGACCGAACGGGCCGCCGTATCTTTACGggttCGGACGACTGCCTGGTGAAGATCTGGGCGACAGACAACGGGCGTCTCTTGGCGACGCTGCGCGGCCACGCGGCCGAGATCTCCGACATGGCGGTGAATTACGAGAACACGCTCATCGCTTCCGCCAGCTGTGACAAGGTCATCCGTGTGTGGTGCCTCCGAACCTGCGCGCCCATCACTGTCCTACAGGCGCACACCGCCTCCATCACCTccatacagTTCTCTCCATCGTCTTTCGGTTCTACGCGCTATCTGGCCTCGACAGGAGCCGACGGCATGGTCTGCTTCTGGCAGTGGAACAGCATCACCATGAAATTCtcTGACAGGCCAGTGAAGTTCGCCGAGCGGTCTCGTCCCGGGGTTCAAATATCCTGCTGCTCCTTCAGTACCGGTGGGATGTTTCTGGCCACTGGAGGGACGGATCATGTGCTCAGGGTGTATTACCTGGGTGGTGAGACACCTGTGAAGTTGTCAGACCTGGACTCGCACACGGATAAGGTGGTTGCCGTGCAGTTCTGCAACAACAGCGACAGTCTACGCTTTGTGAGCGGCAGTCGGGACGGAACGGCGCGGATCTGGCACTACCAGCAGCAGGAGTGGAAGAGCGTCATGCTAGACATGAGCACCAAACTGCCGGGgaGCTCCGCAGCATCAGGAGAGGACAAGACCACCAAGTTGGTGGTTACCATGGTAGCATGGGACCGCAGTGACCGAACAGTCGTTACTGCCGTCTCCAACTTACTCCTCAAAGTCTGGAGCCCCACAAATGGCCAGCTGCTACACGtgctctcgGGTCACGACGATGAGGTCTTTGTCCTGGAGCCCCACCCCTTCGACTGGCGCATCATGCTGTCGGCCGGCCACGACGGCAACATCTACATCTGGGACCTCAGCAAAGGCAACAAAATTCGGAACTTCTTCAACATGattgAAGGTCAGGGTCACGGAGCGGTGTTCGACTGCAAGTTCTCGGCTGACGGTCAGCACTTTGCCTGCACAGACTCGCACGGGCATCTGCTCATCTTCGGCTTCGGCTGCAGCCAAAGCTACGAGAAGATTCCAGATCAGATGTTCTTCCATACAGATTTCCGGCCGTTGATCCGGGACTCCAATAACTACGTCCTGGATGAGCAGACGCAGCAGGCGCCGCACCTCATGCCTCCGCCGTTCCTTGTGGACGTGGACGGGAATCCGCACCCTCCGAGATTCCAGCGCCTCGTACCCGGCCGAGAGAACTGCAAGGAGGAGCAGCTGGTGCCTCAGCTAGGCTACATGGCTAACGGTGACGGAGAGGTGGTGGAGCAGGTGATTGGCCAGCAGACGGCAGATGAGGGTCAGGAAGAGAGCCCATTGGACAGCTTGATCCGGCAACTTCAGCACCAGCAGGATGAGAGACTCAACTCAGGAAACCAGGCTGCAGGTGGTGAAGCAGCAGACGGTCCTCTGTCGCCCCCTAACGTCGGCCTGCGCAGGAGCGGTCAGGTGGAAGGGGTTCGACAGATGCACAACAACGCCCCCCGCAGTCAGATGGCCACGGAGAGAGACCTGCTCGCGTGGAGCCGCCGTGTGGTCGTTAACGAAATCCCCTCAGGAGTGTTCAGgataATGGAGGAGAGTCGACTGGCTAAAGGAGAAATGGAGCGATCTCTCTACAACatggagaggaagaaaaaaccTGTCCATACTACTAGAACGGAGCCGGTTGACGTTTCGGTGCGCTCTCTGCGGAGACCTCAGAGAAAACCGCAGCAGAAACGACACACGTATCACACGCGGTCAGCGCGGGAGAGGAGGCGCGCACGCACGCTCACCAACACGCGTGAGGACAGCCTCAGCGAATCAGACAGCGAGGCAGAGcaggagGAGGATCAGAACGAGAACAGTGACGCATCCTCTGAAGGTGACGCTCAGTGGGAGAACGCCAGCAGCTCAAGTGACTCCTCCAGCGAGTATTCTGATTGGACGGCAGACGCAGGTATCAACCTCCAGCCGCCCAAACGACCAATCAGGAGGCCGGCTCGTATCGCCGGGAGCAGCAGCTCGGAGGACGAAGGCGAGGGGCGGAGAGAAGGGGAGGAGCGTcgcaagaagaagaaggaggaggaggaggagaagaaaaagaaacccAAACAAACTAAACAGAAGACGGTTCCTGCCGGTGAGCTTGAAGAGTGGCTTCCCCCGCCCTGGATAATGGAGACGATACCCAGGCGATCTCCATTCCTACCTCAGATGGGGGacgagttgATATATTTCCGGCAGGGTCACCAGGCGTATGTGCGGGCGGTGCGTCGTGCCAAAGTCTACAGCATTAACCCTCAGAAACAGCCCTGGAACAAACTGAACCtcagggatCAGGAGTGTGTGAAGGTGGTGGGTATAAAGTATGAGGTGGGTCCTCCCACACTCTGCTGCCTCAAACTGGCCTTCCTGGACCCGCTCTCAGGGAAGATGACCGGCGAGTCCTTCAGCTTGAAgtatcATGACATGCCTGATGTCATTGATTTTCTGGTGCTACAACAGTTTTACAACGAGGCCAAAGAACGCAACTGGCAACCGGgtcagcGTTTCAGAAGTATTATAGACGACGCCTGGTGGTTTGGATCAGTGGAAAGTCAGCAGCCGTACCAGCCGGAGTATCCAGACAGCCTTTTCCAGTGTTACGttgtcaggTGGGACAacggtgagagagagaaaatgagccCATGGGACATGGAGCCCATACCTGATGAAGCTCCACTTCCGGACGAGGTCGGCGACAGCGTCCCGGTAACGGAGGAGGAGCTTCAGTCGCTGCTGTACCAACCGCAGGATGGAGAGTGgggcgcacacacacgcgacgaagagtgtgagagagtcaTCAACGCCATAGACCAGCTTTTCACACTggacataGCGAAGGCGTTCTCCTGTCCAGTGGATCTGAGGGATTATCCTCTGTACTGCACTGTGATAGCGTATCCCACTGACCTCAGTACAATCAGACTGAGACTGGTACACCGCttctacagGAGGATTTCAGCGCTGATGTGGGAGGTTCGTTACATCGAGCACAATGCCAGAACGTTTAACGAGCCGCACAGCCCCATCGTCACGGCGGCTAAAGCAGTCACTGACGTCCTGCTGCGCTTTATTGGggATCAGAGCTGTACTGATATCCTGGAGCTGTACAATAAGGTCAAGACGGAGCtcagcagtgctgctgaagaagaggaggaTGTTGATATCGACTCCGACACTCCAGGCACGTCGACTGGCCAGAAGCGGTCCGGTCAGTCGTCTCAGAAGCGGGGCGTGGTGCTGGACGTGCGAGCGTGGTACGGTCAGTGTAAAGAGCTGCTCAGGAGGATGATCGCCAGCTCCGACTCCGAACCCTTCCGCCAACCCGTGGACCTCTTCACCTACCCGGACTACAGAGACATCATAGACACGCCGATGGACCTGGGAACGGTCATGGAGACTCTGGTGGGGGGGAATTATGAGAATCCCATGGAGTTCTCCAAAGACGTCCGGCTCATCTTCAGCAACTCCAAAGCGTACACGCCCAACAAGAAGTCCCGGATTTACAGCATGACTCTGAGTTTGTCTGCGTTCTTCGAGCACCAgatcatctccatcatctcaGATTACAAAGTGGCCATCCAGAATCAGAGACGCTGCCAGCAGAGACTCAGCTACAGCAAGAGACTGCAAAACTCGGTGCCAgagagccCCAAAGGGAAGCCCAAGTCAGTGAAGAAAACTAAAACTCCCCCGCAGCCCAACAGGACCCGCTCACGGCGgccctctgaagATTCGAACCTCGTGCTTGAGGATGAAGACAGTCAGCCTTCATCTTCCTCCCTGTCAGCATCGACATCGTCAGGGCAACCGGCGAGTAACAGAGTCACGCGCAGCAGAGCTCTGAGCAAGAGAGCAGatgCTCACTGCAACGGGCCACTGACTAACGGAGGTCGAAGGTCACGCAGACAACCGGGACAGGGAGACACTTCAGACTCAGAGAGCTCGGAATCTTCATCGTCGTCGTCgtcttcatcctcttcctcctcgtcTTCGTCGTCCTCTTCCTCTGAGAGCGAAGTGAACGACGCCGACGTGGCCAGCTTCGCCGAAGGCGGAGACCACGACTACAGCAAAGCGTCGCGTCTCTCTCTGGCACGCAGAAGCAAGATGGCCGCCGCTAGCTTTGCTGCTAACGCCAAACGGAAAAGAAAAGGGCAAGAAGAGGAAAGGACTGAGTGCCTCAAACGTGCGCGTAGGGAACAGACGCCGGTCCAGGCGGCCCAGAGCGAGGATGAGGACGAGGACGAGGACGAAGATGAGGACGAGGAAAACGAAGAGGTAGAAGAGGAGGAGCCTGAGGGAGAGGAAGaaggggaagaagaagaagaacaagaagaaggggaagaacaagaagaaggggaggaagaagaagaagaagaagaaggggaagagccagaagaagaggaagaagaagaagaggaggaggaggaagaggaaacgAGTCCACAACCTCAGCTTCCTgccagaggtcaaaggtcaagtCAGAGGACAGTGAAAGCGGGGCGTGTAAACACCCGTAACCAAGGGAGACGGACCGTAGTCTATAACGACGACTCGGATGACGATGCGCCCGCCGCTGACCCGCTCAATCTGGGCACGTCGCGTTCCGGAAGGATCCGCCGCATGACCGAGCGAGCCAGGGTCAGCCATCTGATGGGCTGGTCacactgacctttgacctttcgGACATATTTTTTAAGCAacctcagacttttggacttcACTACAGCAATACtgcagggattttttttgtagctgttgatgtacagatttttctttgtcttttttttttttttttttttttttttttattttgttaatgagACTTTTGTTTACGACTCTGGAGCTCGTGGTGCTGATTCCGTCTCGCTCTGGTGTCCGACGAACCAAACCAGCCTTACTGTGGGCCAGAGCATGGAGgagtctctctccctctctctccctctctctctctctctctctctctctctctctctcactgtctgtctctctgtctctctctctctctctctctctctctctctctctctctcactgtctgtctctctgtctgtctcacatctTCTCTTCAGGCTTCATTTGCCAACGTGGTGCTTTTTAAATCAAGTCACTGCACTGCACGCAGGATGATGgtgctgttctctctctctttctctttctctctctctctctttctctttctctctctctctctctctctttctttctttctttctgtattccTCGCCCCCGTGTTAATAAATGGtacattagccagctagctaaagGTTTACATCCCAAATCGCATCCTGCTGTAATAAACACTTAAAATTATCGCTTTAAATTTCAGTATAATGTTTCGTAAAGTTATATTCGGTTTGGGATGCGACTCAAGATTTTCATTCCCTCAAGCTAGCTGTTgcttatttttacaaaaaaatttactCAACTCCTTTACAGACTGTTCTCTCGGATCCTCTTGCgctcttccttccttttctttatcCATTTGCTGACTTTtcgtttttatttaaacaagcTGAGTCAttggtaataaaataaataacaccacaATGAGCTAACATCCAATCAGCTACTTGTTGCCAGGTGGATTTAATCTGACAGAGTGACCTCATTGGTTCTTAAGAGGCTCTCTCTTTGATTGGTTGAAATCTCTCTCGCATTTATTTATAGCTGTATGGATCAGCTAGCTAGTCCTAAATCAGATTTTAGTATTACCTTTgttaataaaagttaaaaatcatAAAGCCTACGTCCCAAATCTCATTCCGTCATACTGCATTATTATTCAAAATGTTCCGTTTTAAAAATTTAGTGTAATGGGGTGAAAGGAAACCAAATAACAACAAGAATCAGACAACCACTAACCAAGAAAATGAGATGATAAAGTTTGCTGCTTCATCAgatccagccaatcagatccaTGTTGCTATGTAGAATGTATCTGACCGAGCGACGCCATTGGCTGTTATCCTGAGCCGATTCCTCTTTCCTCAGTGAGTTCTTCACAGAAGCAGtctctttttaaatttgttaatttaaatacaaactgcaAAATATTCCACGTTTCTAGCTAAGTGAGATTATCTCACATAAAgcctgcttaaaaaaaaaaagcacaggatTAATATCGCACGATTTGCGACAGTTAAGTTAAAAGTAGGCAGGCAGTGTATCAGCGCAGTTGAGGAAACGTCCAATCAGCTTCTTGTTGCTATGCAGACAAATGAAGAGGTGCTTTCTGATTGGTCCAAACCTCTGAGAGGAATTTTGATGGTAGTCATGTTAATCTAAACGCTTATTACTCAGCTAAATATTGCACTTCCCTTCACTAAATCTGATCTTTGCTTTACCTGCGACAAAAGGCCTGGTAGCAAAAGTTTTTGCCCCCCATCCCACCAGCCACACTGACCAGTTTTCCATTCGGATGAATACAGTGGAAtgtcatttgggacacagcgGAAGAGTCGTGTAGGAATTTAATCTCAAGCCATCACCTTTATTCAACTGTTtgttctctccctcttctctcactgtctctctctctctctctttttctctttcccacCTTCAATTCCGGGGTCTGTCCCAAACGCCAGTCTCACTAGCGTTCTTACTATTTTTGTTTCTGAGCGGTCACATGGTGTAACCTTTGTGgcatcccataatgcactgcaagcatacatacagtatgttaatgCTTATGTAATTCAGTAAAGCTAGTATAAATTTAGACAAGTTATTGGTGTTGTATAGTTAGATGTCGTGTGTTTAGAATGCTGTCTTGCTAGCTATTGATTACTAGCGACATTAGCTTAGCCAGCCTACTAAACACAGCAGTGCACCAACATTACTTACAAATCAATTTGCTAACATTTAGCGTTACCTCTTAGCCTCTTTATAATTCTAGTAAGAACGCTAGGTTTAAAGACTAGCATTTGGGACACaccctggattttttttttttttttttcaaaatcttcCAAGATGCATTAACTACTTCCAGGTCATGACCTTGACTTCCTGCCCATATGAGCATCGAGAGCATTGATACACCGAgtgtctgcacacacactgtttttacaatggagtatatttatatttgtactatacacttacacactttgTGATTCATACTTATCAATTGAAACCGATCCAATGATGTTTGCACATGTTACGGCAGCTGTTTGGTCAAAAAAAGGAGTTTGGACGGGCTCTAAATCCTGGCTCCTCATTGGTCGAGAGTCTTCACAAACCAGAGCCAGGGAAGCTCAAAGTATCAGAAGGATGACTGTTTTTGATGGtagtttttcccttttttttttttttttttatagaattacttttcctttctttcattttttttttattatttgacctctgaaaacaggaagtggtgcCAATCTAAGGACTCATGAGATCTTCCAGATCTTGCAGATCTCCACTCTTTTGATTCAGCAGggagtgttttttgtttgtttagtttgtttttttgtttgtttgtttgtttgtttgtttgtttttttaaataaatggtgATTCCTA

Function

symbol description
brwd3 Predicted to be involved in cytoskeleton organization; regulation of cell shape; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 93. Orthologous to human BRWD3 (bromodomain and WD repeat domain containing 3).

NR:

description
PREDICTED: bromodomain and WD repeat-containing protein 3

GO: NA

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300655.1 True 8270 mRNA 0.51 40 17549593 17573276

Neighbor

gene id symbol gene type direction distance location
npas2 LOC108259764,LOC108442046 coding upstream 160167 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 211182 17330096 ~ 17338411 (+)
tnfsf10l4 LOC108259907 coding upstream 227342 17317866 ~ 17322251 (+)
LOC117596262 LOC108259908 coding upstream 272625 17275499 ~ 17276968 (+)
ckma ckma,LOC100304493,LOC108444028,LOC103045415,LOC107548480 coding upstream 479776 17064901 ~ 17069817 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding downstream 3183 17576459 ~ 17581767 (+)
cnga2b LOC108443773 coding downstream 12815 17586091 ~ 17594361 (+)
nexmifa LOC108443769 coding downstream 63440 17636716 ~ 17651357 (+)
tbx5b NA coding downstream 186875 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 199035 17772311 ~ 17777678 (+)
LOC117596270 NA non-coding upstream 220359 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 320349 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 346976 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 378914 17170453 ~ 17170679 (+)
G388468 NA non-coding upstream 492102 17047403 ~ 17057491 (+)
G388619 NA non-coding downstream 1451 17574727 ~ 17620017 (+)
G388640 NA non-coding downstream 113728 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 177923 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 181301 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 227558 17800834 ~ 17801123 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 88524 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 136751 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 204738 17341418 ~ 17344855 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other upstream 260112 17281989 ~ 17289481 (+)
LOC113531069 LOC108259908,LOC108260251 other upstream 269016 17277853 ~ 17280577 (+)
LOC113524235 atrxl,LOC108443772 other downstream 22919 17596195 ~ 17625334 (+)
LOC117596240 NA other downstream 28035 17601311 ~ 17601510 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 86420 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 178263 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 209649 17782925 ~ 17800017 (+)

Expression


Co-expression Network