LOC113531215


Basic Information

Item Value
gene id LOC113531215
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16933682 ~ 16939819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300809.1
GTTAACACACACTTAGTAACTGATGACCATACAAGAAACTGAGGCTAAAGCCATCTGCCTCATTGATGATGTATCTCAAAGGTCTGATAATCTCCCAGTtcttggtggtgctggtggtgaaGAACAGCTCGGCACTCTCGTGTGTGCCGTGTTATCTTTTATCTGGATGTCCAGAGCTGAAATGTCCGGGCGGAAAAGTGATCGGTCTGTGCGGTTGCTGCTACGTGTGTGCCAAACAACTAGACGAACGCTGTGGGGGTCTGTATGGTTTAATTGGGACATGCGACCAGGGACTCCAATGTGTTCTCCCACCTCAAGAAGTCAATGAGACAGTTACAATTATTCATCATGTAGGAGTTTGTCAAgCAAAAACCACGCCAGGACCTGAAGCAACAATACGACCAGCTAATGGCCATACAACACCCAGCACACCAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGGTGATGTTCTTAAAACCGGCACCACACTGAGACAAAACACATCAATAGTACAACAAGCTAATGGCCATACAACACCCAGCACACTAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGGTGATGTTCTTAAAACCGGCACCACACTGAGACAAAACACATCAATAGTACAACAAGTTTCTCCTGGTCCTTCCAACATGAATACAAGTCCAGATTCAAAGCTGCAAAATGGAGTTTCTGCATTCCTCCGAACAAAAGGAGTCGACGTTTTATGCCTCATCATGTCTCTTTGTGTTTTGTCTCTTTTGAAATGATGTCTGTATTGTGATTTAactaacttgtgtgtgtgtgtgtgtgtgttttgcctgTATATACTTAGTGCTGATTGCCATTCTACTTCTGTTTCAAGAA
>XM_034300810.1
GTTAACACACACTTAGTAACTGATGACCATACAAGAAACTGAGGCTAAAGCCATCTGCCTCATTGATGATGTATCTCAAAGGTCTGATAATCTCCCAGTtcttggtggtgctggtggtgaaGAACAGCTCGGCACTCTCGTGTGTGCCGTGTTATCTTTTATCTGGATGTCCAGAGCTGAAATGTCCGGGCGGAAAAGTGATCGGTCTGTGCGGTTGCTGCTACGTGTGTGCCAAACAACTAGACGAACGCTGTGGGGGTCTGTATGGTTTAATTGGGACATGCGACCAGGGACTCCAATGTGTTCTCCCACCTCAAGAAGTCAATGAGACAGTTACAATTATTCATCATGTAGGAGTTTGTCAAgCAAAAACCACGCCAGGACCTGAAGCAACAATACGACCAGCTAATGGCCATACAACACCCAGCACACCAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGCTAATGGCCATACAACACCCAGCACACTAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGGTGATGTTCTTAAAACCGGCACCACACTGAGACAAAACACATCAATAGTACAACAAGTTTCTCCTGGTCCTTCCAACATGAATACAAGTCCAGATTCAAAGCTGCAAAATGGAGTTTCTGCATTCCTCCGAACAAAAGGAGTCGACGTTTTATGCCTCATCATGTCTCTTTGTGTTTTGTCTCTTTTGAAATGATGTCTGTATTGTGATTTAactaacttgtgtgtgtgtgtgtgtgtgttttgcctgTATATACTTAGTGCTGATTGCCATTCTACTTCTGTTTCAAG
>XM_034300811.1
GTTAACACACACTTAGTAACTGATGACCATACAAGAAACTGAGGCTAAAGCCATCTGCCTCATTGATGATGTATCTCAAAGGTCTGATAATCTCCCAGTtcttggtggtgctggtggtgaaGAACAGCTCGGCACTCTCGTGTGTGCCGTGTTATCTTTTATCTGGATGTCCAGAGCTGAAATGTCCGGGCGGAAAAGTGATCGGTCTGTGCGGTTGCTGCTACGTGTGTGCCAAACAACTAGACGAACGCTGTGGGGGTCTGTATGGTTTAATTGGGACATGCGACCAGGGACTCCAATGTGTTCTCCCACCTCAAGAAGTCAATGAGACAGTTACAATTATTCATCATGTAGGAGTTTGTCAAgCAAAAACCACGCCAGGACCTGAAGCAACAATACGACCAGCTAATGGCCATACAACACCCAGCACACCAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGGTGATGTTCTTAAAACCGGCACCACACTGAGACAAAACACATCAATAGTACAACAAGCTAATGGCCATACAACACCCAGCACACTAATGGCTGGCATACTAACAACACGAGGAGAGGATTTCACAGAACACAAAACACCTGACCACCAAGAAGCAAAAACCACAGCAAGAAATGAAGAGACGACACGACCAGccAATCCCACACTGAGAAATAACACTTCACCAGCACAACAAGTTTCTCCTGGTCCTTCCAACATGAATACAAGTCCAGATTCAAAGCTGCAAAATGGAGTTTCTGCATTCCTCCGAACAAAAGGAGTCGACGTTTTATGCCTCATCATGTCTCTTTGTGTTTTGTCTCTTTTGAAATGATGTCTGTATTGTGATTTAactaacttgtgtgtgtgtgtgtgtgtgttttgcctgTATATACTTAGTGCTGATTGCCATTCTACTTCTGTTTCAAGAA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0001568 blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300809.1 True 1107 mRNA 0.45 11 16933682 16939819
XM_034300810.1 False 1048 mRNA 0.45 10 16933682 16939817
XM_034300811.1 False 1050 mRNA 0.45 10 16933682 16939819

Neighbor

gene id symbol gene type direction distance location
ftr84 LOC108259858,LOC108437047 coding upstream 51370 16876564 ~ 16882312 (+)
LOC113531226 NA coding upstream 83371 16846292 ~ 16850311 (+)
LOC113531227 NA coding upstream 88127 16843048 ~ 16845555 (+)
apoa1a apoa4 coding upstream 101733 16829982 ~ 16831949 (+)
pafah1b2 pafah1b2,LOC108437041,LOC107734127,LOC107599209,LOC107661198,LOC107746392 coding upstream 106473 16821301 ~ 16827209 (+)
h3f3c h3f3b,H3F3A,LOC105909691,LOC107572204,LOC107388308,LOC101073377,LOC105891059 coding downstream 4777 16944596 ~ 16950045 (+)
kptn kptn coding downstream 36670 16976489 ~ 16981615 (+)
hnrnpl LOC108260116,LOC108437052,LOC103047348 coding downstream 42377 16982196 ~ 16993865 (+)
ckma ckma,LOC100304493,LOC108444028,LOC103045415,LOC107548480 coding downstream 125082 17064901 ~ 17069817 (+)
LOC117596262 LOC108259908 coding downstream 335680 17275499 ~ 17276968 (+)
G388236 NA non-coding upstream 77273 16851388 ~ 16856409 (+)
LOC113531478 NA non-coding upstream 262966 16669005 ~ 16670716 (+)
G388145 NA non-coding upstream 484015 16449464 ~ 16449667 (+)
G387973 NA non-coding upstream 572681 16350041 ~ 16361001 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 712863 16218765 ~ 16220819 (+)
G388276 NA non-coding downstream 59917 16999736 ~ 17002362 (+)
G388463 NA non-coding downstream 95640 17035459 ~ 17036456 (+)
G388468 NA non-coding downstream 107584 17047403 ~ 17057491 (+)
G388514 NA non-coding downstream 230634 17170453 ~ 17170679 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding downstream 254505 17194324 ~ 17202617 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other upstream 276569 16655669 ~ 16657113 (+)
cdc42ep2 LOC108259851 other upstream 378136 16546110 ~ 16555546 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 723367 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 785250 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 837498 16077089 ~ 16096184 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 338034 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 342170 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 401599 17341418 ~ 17344855 (+)
radx LOC108259901 other downstream 451047 17390866 ~ 17412842 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 515675 17455494 ~ 17461069 (+)

Expression


Co-expression Network