nexmifa (LOC108443769)


Basic Information

Item Value
gene id nexmifa
gene name LOC108443769
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17636716 ~ 17651357 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300928.1
ACACCGTGAAGCATGCCGCGCGACTCGGGCACCTTTTGTTCGTTTCCCGGAAACCCTGGAGCGCGAGGGGAATAAAAATGGAGCGGTAGGGGGCCAAGACGAGGCGCGATTAACGCGCGCGTCCACctgctgctacacacacacacacacacacacaccggggGGAAACGGTCAGGGCTTGCTCGCGCGCacgcaagagagagagagagagagagagagagagatcccgTGGAGAAGAGATAAACATGCTAACAAGCTAAGCGcagagaaaggagaagaagaagaagaagaagaagaaggacgGAGCGAAACCCAAGACGggaagATCGGACAGTAAGAATGACGTTTGTGCAGTGCAGACTTTCTCCAGATTGATGGATGTCCTACAGGAGTCGCGATTCGCAGGGCCTGAGCACTGCCCCAGTCCTCCTAACGCCACAGACAATGacTCGCATGATCATCTCTCTGACAAGTCGCATGTTCTGACACACTGTGACTCCACCGACCCTCCTCTTCTATCCCCACCCACTCTGGATTCCTCCAGCCAGACATCTGAAGTTCCCTTCAGTGTGACAGACCTGCACGATGACTCTGTCTCCAAAGccacctctctctcctccctttcttcattctcttctctctcctccctctcatCCCTCACTTGCTCCAAGCCTGTGAGTCCCTGGTCTGTGCCTCAGGGCTGTGACAGACCATCCCTTTCCAGCATGGATTCTGGGGGAGGAGACTGCATAAGTTGTCTACTTCCAAAGAACCAATCATGTGAGTCCGTTCTTGGATTAACCTCCGATTTCCAGTCCTGCCCTTCCTCCAACATCAGCATGCAGTGCCTCAGCTCTCCCACCACTACTGGCCGCTATGGTGACCAAGTGATATCTGATCAGTTGCTCAGTGGCACCACCCATCCAGCTGGAGTTCATGAAAATGCAGAAGAAGGCAAGTCAATGCGAGAGAGTGAATCAGATGATGATCCGACCTCTAGGAGTATATACGAGAGTTTGAGCGAGGAGGCTCAAGACTGGAGCTGCCTGGAGTCCCTGATCAGCGAGAGCCGAATGGAACTGTTAGACTTGTGCTCTCGCAGCGAGCTTGCAGTCAATCTGTTTTGCGAGGAAGATGTGGAAAACTACATGTTCCAGGATGAGGAGTCAACTCTGGGTACTGACGTCTGTTCGCTCAAAATTCGCTACGAGTCCTACCCGGATGTGGCCCAAGAACGGACTGAGGTCCCCCTGCAAGATGAATCCCAACTAGGCTTTTTTCCCACTCTACCCTGTAGCAGAACGGAAAGTTTGCAAGACAAGATGGACCAATCAAGCGAGGACAAAGTAGAGGCTCCGACAACCCCCAACAGCAATTTTCTTTTTGACCTCAGTAACTCACCGGAGGATTCTGGCGAGTTCAGTGATGACAGCTACTGCACAGGCTCATCGCCTGACACCTGGCAAGCTCAACAACCCCATGGGCAACTGTCCAGAGAGAATTCTAGTTCCTCCAGCCAGCTCAGCTACCGCCTTCGTGCCAAGAGGAAGGTTGCTTTCCGAGAAGACTACCTATATGATGTTGACTCCATAGAGAGTGAGAGGAATGCAGAAAAGCGCAAGAAGCTGTCAGTCGGACCTAAGAAAGAGTGGGACGATGACTGGTGCCCAAAGAAGCGGCGCCGGTCATGTCGAAAGGAGCCGCCGGTCATCATTaaatacatcatcatcaaccGCTTTAAAGGTGAGAAGCACATGCAGGTGAAGTTGAGTAGAGTGGAACCTTCAGTCTCAACGGTGAATCTAAATCCAGATACCTTACTGCACTATGAAAAACTGGCACCTCTGAAGGCCTACTGGcagaagaaggaaaaggaacAGCAGGAGCAGAACTCAATAGCAGCTGCAGACAAAACCAAACGCCTCAATGGCTGCAAAAGGCCACCGAGCACTACCCCTAAACGCAAACAAAGGAGCGCAAGACTCAGGATTCAACGGGTCCCTGCTGTAGAGACTGCAATCGCCAGCCAAACTGCTGCTGCATTGTGTAACAATCAACAAGAAATGGCTGACTCAGTAAAAAGCACAGAAGACCTACAACGGGCCACAACACATGATGCCTTGGACAAAGTAGAGACAGGTAAAACTACACACCAAGCCAGGGCTAAGAGCAGAACTCAAGAgcgagaggagaggagaaaactAGATAAAACAGTGAAGATAAAGAAATTCAAAAGTGAAGCCAGACTGAGGGCTAAAAAGCTACAGGAAGCACAGAAAGAGGAAAACCCCACTGCCTCTGAACTTACAGAGTTAAGTTCTTGTTTACCTGAAAACCTTAGTGACTCTTTGGAAAGTAATCTTCTCACAAATGAGACCTCGGTTGAAAAATGCACTTTGACTCCCACTGCCCCTGGGACTAATGAAAATGTGGACCTCCTGCCTGGTGGATATCTACAGACTCTTCTGGAAGCTTCAGAATCTTCCAGCAGTGCCAATGTCACATATTTTTCTACAGACCAGCAGCAGACAGGGTTGCTACCAGTTGCAGCCCCTCTGCAACCAGTTCAAACATGTGTACTGTCCCCTCCCTCAGAATCTGAGCTCCCACACTCACCCCAGCCTCTCAATCACATCCCACACCACACATCGTTCCCTGAGACCGACCACCCTGAACAAAGCTACCCTGTCAACTGGCCTTCCCAACCCACCGTTGAGCAGCTTTCATTCTCTCCCGACATCCCAACTCAGTCCCCAGTCATGCCGTCAGGCTTTCCTAGGCCAATGCCTGTACTAGCAGGGGATGGCACAACAGTGACAGGGTATAGCCAGGTACCACTGGGTACCTGCAGGATGGCATTCGAAGAACCAATCTTGCCAGAACCCCACTCGGATACCGATTATGGGCGTAGTCCGGTGGGATCACGAGTTGAAAACGGCATGGGCCGACTCGTCAGCTTTAACTCTCTGGGATCTCTTTCTGCAGCTTCAAGCAACTATAGTTCTCTTAGCCTGAGAGAgggtgaaagagaaagagaagaggagatgaGCGAGATTAGTGAtggtttcctctcacattgcagCCCTCAACTAGTTCTGCAGCAGAGCCTTGAGGAGATCACTCCACTTCGAGAGTCCACTGACTTGCTTGATATATCCAACTTCACCCCTGACAAGTTCCGGCATTCCTCCTTGTCTGAAATGTCCCCACCTGACACACCTAGCCCCTCACCACAGCTGCTGGGGAACTGTGGCAAAGGGGGAGGGTTTCTGGAAGCAGCAGGGGCTAATGTGAGGTGGAGCTGCAGCACTGTCCCACAAGTCGAGCAAGATGCATCACAAAACGCACACCTCTTACAAACCTTCACtgaggaggatgatgaagaaGGGCTTCAAGGTCTTAAAAGGTCTAAAAAGAAGGGAGGAAAGAATGGACAAAGCACCAAAAAGACCAAAACTCCCAAGGCGGCTAAAGGTGAGAGGGTTAAGCTCCCAAAACAGGGTTCACATTCTGCTAAGAAAATCAAGGCATTATTAGAGGGGAAAGCAGCTAAAGGTGAGAGGAAATTAGACAGCGGTGCTCCTTCTCCAACCCCCTCCCTGAACATGATAGGGGCTCAGGGGGACTGGCCGAATGCTGGAGCTCTATCAGATGATGATCAGGGTGAGTTCCAAGAGCCGTCGAACATCCTGTCCAATATAGTCTCCGGGATGGCAGAGGTGCAACGCTTCATGCGGGCCTCAGTAGAACCACTTTGGGGGCCTTGTCTGTCACCAGGGCAGCATGCTCTCCAAAGCCAAACACTGAAAATACTTGGTAGCAGTGCTGACCTTAAGAAACGGGGCAGTGCATCAGGGGCAAGTAAGGGGAAGAAAGGGACAGGGCGCGATGGTAAGACCTCATCAAAACTTCTTGCACCTGGCTTCTTCCCTCCTATCGGTTTGGATTGCCTCCCGCTTCCTCACCGGCCTGCTCACAAAAAGATGTACCGCCACAAAAGCACCACAAAGTTTGCCCGTGATGAACTTTTAGCGGGTAAAAGGGACATCAAAGGAGTTGCATTGGCAGCTTTGGTAGAGAAACAGAGGTAATATTTTCTCTTTGCAAAGTACCCATGTCAATCCTTGTTTCCTGTCAAATCCTTCTGAGCCgccaccaccacacacatttcagaGCTGCATGGCACTGACTTTACCCACAGTCCTTTGCCTGCCCCACAGGAAAGTGGGTACCCCCTGCATGACAGCCCTGCTAAGCTACCTACTGACTAAGTGGAGTCACTGTATCACAGCTGCATCTATCTGCCATTTGCTgctttgttgcatttttttaatcagtttattttttgatcagttttttttaaagagacaaTGCCTTGAAAGCCACCTTAAAGCATACTCTGGTGTAGTATTACATTTTGAgggggtttgttttttttctctctgtcacaGGTCAAGCGCTATAAGTGTTTAATCCGTGTGCTAACACTGTTGTTTAAAACAAGCCCATCACTTGCAAAATGGTTGCCTTCTGTTGTTCACGggtcaaagttttttttttttttttttttttttgtagtattcCCCTCATTAAGAGTATTCCAGTGTTACTGTGCCAACCATTTGGAAAGATTCGGGAACTCCACGGGTAGCGCATATTTAGAAAAGGACATCATACTTTTGTATAAGACACTCGTGTCTTAATGTAATAGTTGTCTTTagtattatgtttatttatggttCGAGTATTGAGGGTTTGGTCACCGGTGCCATAGGCTGACCCGAGTCCTCTCTGCCAGTATCGAAATGCTGTTGTACAGGAACATATGCACTATTTACAAAATAAGATTATAtcaaacatgtttaaaattaaCGTGCCAAAATATGAACAATTAAGTGTACAGAACATTTTTAtctacataataaatatttgctgttttttaatgtggtggtggttgtggGAATGTATGTGTGCGGTCTCGGGGTGGGTTGGAGAATAATTTCGGATTTTACTGTTGTTACATATGCAGACATCGGTTTGTGGAGTCTTCTGTACAATCGGGGAGAACgatatcactgtttttttttcactgttttgttcgATATTACACGCTTAGTGAGtcgcaaaaagaaagaaagccacTGAGCAGAAGAGTGAACGAAGAGGAAGAGTCGTAACATTGTAACTACGCATGTGccaaatataaattatttaacattttatcacaatttatcatatcacaatatttaaaagACATGACTTCATGtttatttgtatgtgttttcatAGGGCAGCATTTTAAACGTAAATGAAGAAATCTTATTTTGGGATTTAAGCCAACAGAATTATGCTAGCTAGTAGGGATGATATAATTATCATATCTCAATACTTGAAGATGTTTTCACGATACACAATATGAATCGCCAGCACAGTGCCAAGAAAACAGTAGtgccaaatttaaaaaaacaaaaactcgtaatattttaatactttttttttttatatatatatagttttaacaATTAACAAATAGCCACAGAAATACATCTTGATATTCAGTAAGCTACTGGATACCGTTAATAACAatgaaatgttataaaattactttatgatttattaatttcttttatgaTTGTGATATAATATATCACTCAGCACTACTAGCTAGCAAGTTACATATGCCACCTACTGGTAGGtgttacattagctagctaaatataaGCTACgaaatattagctagctaattgtaAGCAATGAAACGTGGAGTTAACTTGCTTTTGTAGAGTTTTGTGGTCTCCAGATTTGCTTTACTCTGGACCCAAAAAGGAATTTTTGCAGATTTCAAAGCAAAAATGCTGCATAGCATGGAACTAAAGAGTACTTTTACCGAATATTAGCACATGCCTAGTTATACATGATCTACTGAGTGACATTGTGTCGTCCTCCTGCTACGAAAAGGGTTCgataataaaatatgtacagaGGGAACTGGACTAGCAGTAACTTACCATAAATCAGTGTAGATCATGAAAGACTTTATGATTCCTCTTCATAAAGTTTGCATTCCCTAATAAACTCTAATAAAATGATCAGTGGGAACTTTCACACTTCAGTTTTGCAGACAACAGGACCAAATTATTTTTTGAGAGTTTTTCCAGTGTTGCTAGCGATGTGCATGCATAACCATGATATTCAAGCTAAGTTGTGCATGCAGATGCCCTTATTtagcatcttttttttgttcgtttttttttcctcttgcgATGTTtgaatgttatttaatgtttacaaaaaaataatgtgagTACCCCAGCATTCCCTAGcattctttttttagtttttttcccctattatttatgtattttttggaCGAGGGAACTATACAGACTTATAAAATTCCCttgtaaagaaaaatgaaatgcagcatTTGCATCGACTACAAAGTTAGtcaaaaaaacatccatgtgCCATATTTTTACGAATGTATTATGCCTTCATGGTTTTTATTTCGCATAactttttttgccttatttatttatttttttcatcacaataACAGACCTGTTTGTATCATCTGGTATCTTTGCCAGGAGGATTATTAAAACTCTTGatgtagggggaaaaaatttaaCAACCTGTATATTTTTCATCGTGCCAATTTGTAACATATTTTCTAAGTGTATATTTTTCTTAGAAAGTGCTGTGAGGTCGTTTCTTGATGTGGCTTCTGTCCTTTTGCCTTTCAGGCAGTGAAAAAGGTCACTGAATTATcatgggatttttttgtttgtcttaaaGCCAAAAAttgtgaaagacaaaaaaaatcctttggtAACGGAGAAAAAGCTGTGGCTTTGTTGAGTTTTGTTATTGGACCAATCTTATTGTGAGAGTGTTGTGCTCTAGTAAATCAATTActgataaaaaatgaaaacagacagcTAATTAATGACACTAATTTGTGATTTAATCTctgttttatagattttaatgtaaattattctagtattttgtttctgttgtaTCCGTTTCAAAGGTTTAAATATTTGTGAACCAGCCTGTATggtgaaaaatgtaatattggtAACTGGAGTTTTGTAATCAT

Function

NR:

description
PREDICTED: protein KIAA2022 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300928.1 True 7105 mRNA 0.44 3 17636716 17651357

Neighbor

gene id symbol gene type direction distance location
cnga2b LOC108443773 coding upstream 42355 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 54949 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 63440 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 247290 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 298305 17330096 ~ 17338411 (+)
tbx5b NA coding downstream 108794 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 120954 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 153433 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 158289 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 163472 17814829 ~ 17817226 (+)
G388619 NA non-coding upstream 16699 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 307482 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 407472 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 434099 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 466037 17170453 ~ 17170679 (+)
G388640 NA non-coding downstream 35647 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 99842 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 103220 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 149477 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 170359 17821716 ~ 17873548 (+)
LOC113524235 atrxl,LOC108443772 other upstream 11382 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 35206 17601311 ~ 17601510 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 175647 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 223874 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 291861 17341418 ~ 17344855 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 8339 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 100182 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 131568 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 444809 18096166 ~ 18143123 (+)
G389305 NA other downstream 1044451 18695808 ~ 18769458 (+)

Expression


Co-expression Network