LOC113531306


Basic Information

Item Value
gene id LOC113531306
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10482134 ~ 10490299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403244.2
agccgggtgcgtcacttacctgagGATGAGATGGCACCAAGATGCAAAGCTGAGGATTTAAGAGTGAAAACTCCTGGTTTCTCATGCTGCAGCTGAGCTCACTTTATGTAATTGGGGAATTTATATGGAGGCCAATAGTGGGCATCCTTTCCAGCCATCCACATAGTGCTTACCACTTCCACCTCTCCCTGTCCCAAGAAATCCACGACATAGGAAAAGGGTGAGGTCCAACATAGTACAACTGAAAAACTGAATCACTGGCCCAGGAAGTTTTCAAAAGGAAATGCAGACACATGATCTAATGGACCAAACCTTCTCCAGATGACACAGACAGTGAACATTGTACAACATCTCCTCAACCCCATACAAGGTCCTGAACTGTTCAAGGAAGTACCAAATCAGATTATCTGTATAATTGCAGTAATGGGCACACAGGGTAGGAGAAAGCATCAAATAGATGCTGATAGACAGTGTAAGGAAGTTAACATAAAGTGGAGTTGGGAGGACTCCTTTCAGTACCACTGGACCAGTGTACAGAAGAAATCGCCTAAACTTGGTAGCTTTCCAGGGGTATAATTCTGAGACAGATCTCGGCCTTCGTGCTGAGGTAAGTACTGTGACATCCCTAAACGTTTTTCTAAGATGGAACTGATCTTAAGGGAGCCCAGTCTGTATTTGTATGATCCAAAATGTGAACAGCTACCTTGTAACACCAAGGCAAACAACATGCATATAGTCTAGCGCAAATTGTGTGACCACAAATGGATCCCTTTCAAAAGGGAATTTACCCAAAATTGGTCAAGGTTGCTTTAGAGAACTTTTGAACAATGGCAGTCCATCTGTGTTCACCTCCAATGTGACTGTATCAGTTTGTGACAGCAGTCCCCCTTTGTTTTGGAGCAAATGTTCCAGTATGCCAAAATGGACATACTCCCCACCATCAATTGCTTTGACCTCA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403244.2 True 958 lncRNA 0.44 4 10482134 10490299

Neighbor

gene id symbol gene type direction distance location
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 103996 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 140630 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 197583 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 220389 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 259102 10211942 ~ 10223032 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 295258 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 535569 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 728759 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 971404 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 1152824 11643123 ~ 11681971 (+)
G384592 NA non-coding upstream 93863 10380570 ~ 10388271 (+)
G384608 NA non-coding upstream 120644 10361255 ~ 10361490 (+)
G384607 NA non-coding upstream 123636 10358270 ~ 10358498 (+)
G384606 NA non-coding upstream 123871 10357659 ~ 10358263 (+)
G384583 NA non-coding upstream 175226 10306674 ~ 10306908 (+)
G384700 NA non-coding downstream 69706 10560005 ~ 10560651 (+)
G384705 NA non-coding downstream 76005 10566304 ~ 10566511 (+)
G384725 NA non-coding downstream 101977 10592276 ~ 10592482 (+)
G384728 NA non-coding downstream 104151 10594450 ~ 10594665 (+)
G384740 NA non-coding downstream 118653 10608952 ~ 10609617 (+)
G384593 NA other upstream 102469 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 714098 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1707000 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1889753 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1916877 8558826 ~ 8565257 (+)
ajm1 c28h9orf172 other downstream 807675 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1227719 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2300602 12790901 ~ 12800917 (+)
G386294 NA other downstream 3331489 13821788 ~ 13824055 (+)
G386325 NA other downstream 3335551 13825850 ~ 13828148 (+)

Expression


Co-expression Network