LOC113531672


Basic Information

Item Value
gene id LOC113531672
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9371060 ~ 9371137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403274.1
CTGCAATGATGTCTTGAATTTCTTCACCTGAATGCACTGTGAAGATCAAAATAGACGAGCTTTTTAACCCTGAGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403274.1 True 78 ncRNA 0.40 1 9371060 9371137

Neighbor

gene id symbol gene type direction distance location
LOC113531687 NA coding upstream 1732 9369261 ~ 9369328 (+)
LOC113531686 NA coding upstream 2157 9368831 ~ 9368903 (+)
LOC113531685 NA coding upstream 2496 9368489 ~ 9368564 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding upstream 12172 9351540 ~ 9358888 (+)
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding upstream 87282 9255884 ~ 9283778 (+)
LOC113531683 NA coding downstream 322 9371459 ~ 9371530 (+)
surf6 surf6 coding downstream 9449 9380586 ~ 9387508 (+)
LOC113531633 LOC108260322 coding downstream 18305 9389442 ~ 9397886 (+)
LOC113531568 LOC108260321 coding downstream 30918 9402055 ~ 9413856 (+)
LOC113531574 LOC108260319 coding downstream 46321 9417458 ~ 9429225 (+)
G383965 NA non-coding upstream 28415 9342428 ~ 9342645 (+)
G383961 NA non-coding upstream 31914 9338933 ~ 9339146 (+)
G383960 usp20 non-coding upstream 33154 9336910 ~ 9337906 (+)
G383959 NA non-coding upstream 35439 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 36830 9333677 ~ 9334230 (+)
G383971 NA non-coding downstream 1029 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 82908 9454045 ~ 9456252 (+)
G384106 NA non-coding downstream 115325 9486462 ~ 9486667 (+)
G384125 NA non-coding downstream 155174 9526311 ~ 9526518 (+)
G384134 NA non-coding downstream 189998 9561135 ~ 9561374 (+)
G383625 LOC108260351 other upstream 595926 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 778679 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 805803 8558826 ~ 8565257 (+)
G383217 NA other upstream 1157953 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1209803 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 394603 9765740 ~ 9768036 (+)
G384593 NA other downstream 1007076 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1926837 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2346881 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3419764 12790901 ~ 12800917 (+)

Expression


Co-expression Network