LOC113531683


Basic Information

Item Value
gene id LOC113531683
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9371459 ~ 9371530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403285.1
TGGCTATGATGTCTGAATTTCTTCACCTGAACAACCATGTGGTTTCAAATGAGCTTTTTAACCCTGAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403285.1 True 72 ncRNA 0.39 1 9371459 9371530

Neighbor

gene id symbol gene type direction distance location
LOC113531672 NA coding upstream 322 9371060 ~ 9371137 (+)
LOC113531687 NA coding upstream 2131 9369261 ~ 9369328 (+)
LOC113531686 NA coding upstream 2556 9368831 ~ 9368903 (+)
LOC113531685 NA coding upstream 2895 9368489 ~ 9368564 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding upstream 12571 9351540 ~ 9358888 (+)
surf6 surf6 coding downstream 9056 9380586 ~ 9387508 (+)
LOC113531633 LOC108260322 coding downstream 17912 9389442 ~ 9397886 (+)
LOC113531568 LOC108260321 coding downstream 30525 9402055 ~ 9413856 (+)
LOC113531574 LOC108260319 coding downstream 45928 9417458 ~ 9429225 (+)
prkaa1 prkaa1,LOC108260283,LOC107730998,LOC107693840,LOC107691024,LOC107597029 coding downstream 60998 9432528 ~ 9451287 (+)
G383965 NA non-coding upstream 28814 9342428 ~ 9342645 (+)
G383961 NA non-coding upstream 32313 9338933 ~ 9339146 (+)
G383960 usp20 non-coding upstream 33553 9336910 ~ 9337906 (+)
G383959 NA non-coding upstream 35838 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 37229 9333677 ~ 9334230 (+)
G383971 NA non-coding downstream 636 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 82515 9454045 ~ 9456252 (+)
G384106 NA non-coding downstream 114932 9486462 ~ 9486667 (+)
G384125 NA non-coding downstream 154781 9526311 ~ 9526518 (+)
G384134 NA non-coding downstream 189605 9561135 ~ 9561374 (+)
G383625 LOC108260351 other upstream 596325 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 779078 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 806202 8558826 ~ 8565257 (+)
G383217 NA other upstream 1158352 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1210202 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 394210 9765740 ~ 9768036 (+)
G384593 NA other downstream 1006683 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1926444 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2346488 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3419371 12790901 ~ 12800917 (+)

Expression


Co-expression Network