LOC113531685


Basic Information

Item Value
gene id LOC113531685
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9368489 ~ 9368564 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403287.2
CTGCAGTGATGGTTTGAATTTCTTCACCTGAAAACCCATGTGGAGCAAAAACTCGAGCTTTTTAAATCTGAGCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403287.2 True 76 ncRNA 0.39 1 9368489 9368564

Neighbor

gene id symbol gene type direction distance location
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding upstream 9601 9351540 ~ 9358888 (+)
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding upstream 84711 9255884 ~ 9283778 (+)
usp2b usp2b,usp2,LOC108260071,LOC108431020,LOC107665042,LOC107740817,LOC107731051 coding upstream 135847 9186660 ~ 9232642 (+)
tecta tecta,LOC107665015,LOC106603728 coding upstream 183207 9159028 ~ 9185282 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding upstream 214163 9131889 ~ 9154326 (+)
LOC113531686 NA coding downstream 267 9368831 ~ 9368903 (+)
LOC113531687 NA coding downstream 697 9369261 ~ 9369328 (+)
LOC113531672 NA coding downstream 2496 9371060 ~ 9371137 (+)
LOC113531683 NA coding downstream 2895 9371459 ~ 9371530 (+)
surf6 surf6 coding downstream 12022 9380586 ~ 9387508 (+)
G383965 NA non-coding upstream 25844 9342428 ~ 9342645 (+)
G383961 NA non-coding upstream 29343 9338933 ~ 9339146 (+)
G383960 usp20 non-coding upstream 30583 9336910 ~ 9337906 (+)
G383959 NA non-coding upstream 32868 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 34259 9333677 ~ 9334230 (+)
G383971 NA non-coding downstream 3602 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 85481 9454045 ~ 9456252 (+)
G384106 NA non-coding downstream 117898 9486462 ~ 9486667 (+)
G384125 NA non-coding downstream 157747 9526311 ~ 9526518 (+)
G384134 NA non-coding downstream 192571 9561135 ~ 9561374 (+)
G383625 LOC108260351 other upstream 593355 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 776108 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 803232 8558826 ~ 8565257 (+)
G383217 NA other upstream 1155382 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1207232 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 397176 9765740 ~ 9768036 (+)
G384593 NA other downstream 1009649 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1929410 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2349454 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3422337 12790901 ~ 12800917 (+)

Expression


Co-expression Network