LOC113531686


Basic Information

Item Value
gene id LOC113531686
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9368831 ~ 9368903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403288.1
TGCAGATGATGTTAAAGAATATTTGCTATCTTAGCCGCAATGCAGACAATCTCCCACCAAGATCGCTGATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403288.1 True 73 ncRNA 0.42 1 9368831 9368903

Neighbor

gene id symbol gene type direction distance location
LOC113531685 NA coding upstream 267 9368489 ~ 9368564 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding upstream 9943 9351540 ~ 9358888 (+)
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding upstream 85053 9255884 ~ 9283778 (+)
usp2b usp2b,usp2,LOC108260071,LOC108431020,LOC107665042,LOC107740817,LOC107731051 coding upstream 136189 9186660 ~ 9232642 (+)
tecta tecta,LOC107665015,LOC106603728 coding upstream 183549 9159028 ~ 9185282 (+)
LOC113531687 NA coding downstream 358 9369261 ~ 9369328 (+)
LOC113531672 NA coding downstream 2157 9371060 ~ 9371137 (+)
LOC113531683 NA coding downstream 2556 9371459 ~ 9371530 (+)
surf6 surf6 coding downstream 11683 9380586 ~ 9387508 (+)
LOC113531633 LOC108260322 coding downstream 20539 9389442 ~ 9397886 (+)
G383965 NA non-coding upstream 26186 9342428 ~ 9342645 (+)
G383961 NA non-coding upstream 29685 9338933 ~ 9339146 (+)
G383960 usp20 non-coding upstream 30925 9336910 ~ 9337906 (+)
G383959 NA non-coding upstream 33210 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 34601 9333677 ~ 9334230 (+)
G383971 NA non-coding downstream 3263 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 85142 9454045 ~ 9456252 (+)
G384106 NA non-coding downstream 117559 9486462 ~ 9486667 (+)
G384125 NA non-coding downstream 157408 9526311 ~ 9526518 (+)
G384134 NA non-coding downstream 192232 9561135 ~ 9561374 (+)
G383625 LOC108260351 other upstream 593697 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 776450 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 803574 8558826 ~ 8565257 (+)
G383217 NA other upstream 1155724 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1207574 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 396837 9765740 ~ 9768036 (+)
G384593 NA other downstream 1009310 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1929071 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2349115 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3421998 12790901 ~ 12800917 (+)

Expression


Co-expression Network