Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596213 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 12626492 ~ 12627278 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577380.1 | True | 519 | lncRNA | 0.40 | 3 | 12626492 | 12627278 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hexb | hexb | coding | upstream | 340368 | 12269176 ~ 12286124 (+) |
| LOC113531115 | NA | coding | upstream | 362408 | 12253827 ~ 12264084 (+) |
| arhgef28a | arhgef28 | coding | upstream | 508054 | 12026060 ~ 12118438 (+) |
| btf3 | btf3,LOC107655933 | coding | upstream | 616270 | 12002274 ~ 12010222 (+) |
| ptcd2 | ptcd2 | coding | upstream | 944521 | 11643123 ~ 11681971 (+) |
| ttll11 | ttll11,LOC107700937,LOC107596909 | coding | downstream | 368980 | 12996258 ~ 13020139 (+) |
| specc1 | specc1 | coding | downstream | 574526 | 13201804 ~ 13272662 (+) |
| adora2b | adora2b,LOC108428193,LOC107665025,LOC107712140 | coding | downstream | 646607 | 13273885 ~ 13285031 (+) |
| c27h11orf54 | c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 | coding | downstream | 890192 | 13517470 ~ 13522726 (+) |
| LOC113531575 | spata22 | coding | downstream | 895739 | 13523017 ~ 13631816 (+) |
| G385594 | NA | non-coding | upstream | 78376 | 12547837 ~ 12548116 (+) |
| G385588 | NA | non-coding | upstream | 156328 | 12469723 ~ 12470164 (+) |
| LOC117596248 | NA | non-coding | upstream | 223073 | 12360613 ~ 12403419 (+) |
| G385429 | NA | non-coding | upstream | 303691 | 12280589 ~ 12322801 (+) |
| LOC117596260 | NA | non-coding | upstream | 436024 | 12182459 ~ 12190468 (+) |
| G385624 | NA | non-coding | downstream | 91407 | 12718685 ~ 12719442 (+) |
| G385698 | NA | non-coding | downstream | 174081 | 12801359 ~ 12802002 (+) |
| G385697 | NA | non-coding | downstream | 177750 | 12805028 ~ 12805853 (+) |
| G385695 | NA | non-coding | downstream | 180045 | 12807323 ~ 12809012 (+) |
| G385823 | NA | non-coding | downstream | 367767 | 12995045 ~ 12996216 (+) |
| fcho2 | fcho2,LOC107700925,LOC107655928 | other | upstream | 791448 | 11718018 ~ 11835044 (+) |
| ajm1 | c28h9orf172 | other | upstream | 1300437 | 11297974 ~ 11326055 (+) |
| G384593 | NA | other | upstream | 2246827 | 10378213 ~ 10379665 (+) |
| G384178 | ier5l,LOC108228905 | other | upstream | 2858456 | 9765740 ~ 9768036 (+) |
| G383625 | LOC108260351 | other | upstream | 3851358 | 8764902 ~ 8775134 (+) |
| zgc:63972 | LOC108260458 | other | downstream | 163623 | 12790901 ~ 12800917 (+) |
| G386294 | NA | other | downstream | 1194510 | 13821788 ~ 13824055 (+) |
| G386325 | NA | other | downstream | 1198572 | 13825850 ~ 13828148 (+) |
| c27h11orf88 | c28h11orf88 | other | downstream | 2536106 | 15163384 ~ 15233692 (+) |
| sik2a | sik2 | other | downstream | 2617727 | 15245005 ~ 15274079 (+) |
