LOC117596240


Basic Information

Item Value
gene id LOC117596240
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17601311 ~ 17601510 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577427.1
TGAGACGAGAGAAAACAGATGATGACGCTGATTGTGTCAGGTGTCCCCTCAGGTGTCCCCTCAGGTGTCCCCTCAGGTGTCTGAGTGTCTGTTAACACTGGTTTGTGCTCTGTGTACTCAGGCCGATCTTCaccaatgtaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577427.1 True 152 ncRNA 0.47 2 17601311 17601510

Neighbor

gene id symbol gene type direction distance location
cnga2b LOC108443773 coding upstream 6950 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 19544 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 28035 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 211885 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 262900 17330096 ~ 17338411 (+)
nexmifa LOC108443769 coding downstream 35206 17636716 ~ 17651357 (+)
tbx5b NA coding downstream 158641 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 170801 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 203280 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 208136 17809646 ~ 17814029 (+)
LOC117596270 NA non-coding upstream 272077 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 372067 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 398694 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 430632 17170453 ~ 17170679 (+)
G388468 NA non-coding upstream 543820 17047403 ~ 17057491 (+)
G388640 NA non-coding downstream 85494 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 149689 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 153067 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 199324 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 220206 17821716 ~ 17873548 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 140242 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 188469 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 256456 17341418 ~ 17344855 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other upstream 311830 17281989 ~ 17289481 (+)
LOC113531069 LOC108259908,LOC108260251 other upstream 320734 17277853 ~ 17280577 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 58186 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 150029 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 181415 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 494656 18096166 ~ 18143123 (+)
G389305 NA other downstream 1094298 18695808 ~ 18769458 (+)

Expression


Co-expression Network