Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596241 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 6811118 ~ 6815375 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577428.1 | True | 653 | lncRNA | 0.52 | 3 | 6811118 | 6815375 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hspb1 | hspb1 | coding | upstream | 26730 | 6777992 ~ 6784388 (+) |
| srrm3 | srrm3 | coding | upstream | 37211 | 6691036 ~ 6773907 (+) |
| LOC113531024 | LOC108260100 | coding | upstream | 123142 | 6668932 ~ 6687976 (+) |
| c1qbp | c1qbp | coding | upstream | 148868 | 6658053 ~ 6662250 (+) |
| LOC113531298 | myo19,LOC107591502 | coding | upstream | 157216 | 6633970 ~ 6653902 (+) |
| LOC113531112 | tspoap1 | coding | downstream | 16309 | 6831684 ~ 6931919 (+) |
| mtmr4 | mtmr4 | coding | downstream | 264732 | 7080107 ~ 7149766 (+) |
| ca4a | LOC108259876 | coding | downstream | 347924 | 7163299 ~ 7179897 (+) |
| gusb | gusb,LOC107591494 | coding | downstream | 409335 | 7224710 ~ 7238694 (+) |
| rplp0 | rplp0,LOC107654305 | coding | downstream | 460179 | 7275554 ~ 7279408 (+) |
| G382292 | NA | non-coding | upstream | 551 | 6810353 ~ 6810567 (+) |
| G382274 | NA | non-coding | upstream | 1577 | 6807179 ~ 6809541 (+) |
| G382257 | NA | non-coding | upstream | 142733 | 6666639 ~ 6668385 (+) |
| G382207 | NA | non-coding | upstream | 230508 | 6579113 ~ 6580610 (+) |
| G382205 | NA | non-coding | upstream | 234936 | 6575979 ~ 6576182 (+) |
| G382351 | supt4h1,LOC107654296,LOC107563417 | non-coding | downstream | 136344 | 6951719 ~ 6954928 (+) |
| G382380 | NA | non-coding | downstream | 251438 | 7066813 ~ 7067761 (+) |
| G382606 | NA | non-coding | downstream | 293351 | 7108726 ~ 7109709 (+) |
| LOC117596228 | NA | non-coding | downstream | 339219 | 7154594 ~ 7157229 (+) |
| G382646 | NA | non-coding | downstream | 571135 | 7386510 ~ 7388236 (+) |
| ubb | ubb,LOC107567755,LOC107588961,LOC107387081 | other | upstream | 427433 | 6380662 ~ 6383685 (+) |
| G381893 | NA | other | upstream | 568421 | 6223168 ~ 6242697 (+) |
| G381835 | NA | other | upstream | 630205 | 6177804 ~ 6180913 (+) |
| zmp:0000001168 | sipa1,LOC108430456,LOC107742927 | other | upstream | 758762 | 5990022 ~ 6052356 (+) |
| G381829 | LOC108259779 | other | upstream | 834193 | 5975369 ~ 5976925 (+) |
| LOC113531592 | rnf43 | other | downstream | 146835 | 6962210 ~ 7058199 (+) |
| LOC113531088 | NA | other | downstream | 444878 | 7260253 ~ 7261090 (+) |
| dpm2 | dpm2,LOC107664400 | other | downstream | 722983 | 7538358 ~ 7544114 (+) |
| spns3 | LOC108260438,LOC108260072 | other | downstream | 1327208 | 8142583 ~ 8161257 (+) |
| G383217 | NA | other | downstream | 1367016 | 8182391 ~ 8213107 (+) |
