LOC117596264


Basic Information

Item Value
gene id LOC117596264
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11126383 ~ 11127885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577443.1
TCAGTTGGCAAAATGGAAGAAGATGGTTCCTCGGCACAGTGTGAGCAACCATGGCCATACTTAAAAAGTATGTTCCAGTTTTCTGAAAAGGTCAAAGATTCTTTTCGTTTaaaatgtttgctttgtttgccTAAACAAATCACAGCCTTCAAAAACTCGCCGTCCAACCTGCGAAAGCATATTGAGGTACAGTCCAGCTGAAATGGCCTTTTGGGGGGGAATATACTACCACCATGAGTCTAGTTGTGAAGGCGACAAACATATTACAAGGAGATTCCAACATTCAGACTACTATTACTATCCTCATCACCAAGCTTGAGAAAACAAGAGCATCGCTGAGACTCTGCAAGCCGCTAGTTGATGCCCTCCTAGATGGTTTGAAAAAACGGTTTGGGAACATGATGTCTGATCCCGAGCTAGTTGCTGCAGCCATTATTCATCCAGAGTTCAATACATCCTCAAACTTGGCCTCACTTACATCAAGGAACATCTTTCTGATCATGATGAGTCTTCAACTCCTCAAGCACTTCTGATGAAGAGGATTTCTTCTCTAATATCAAGCATACATGCACACAGGAAACATCCTAACAACTGGATGTATACCTACCATGTATAGCTGAAGGTTTGACTATGTTGACATCTTATCCAGCCTTATCCATCCTGTCGCTCAAGCTGACCACAGCCCTGCCTGTGAAAGGCTTTTTAGTGCAGCTGGATTGATTGCAGCCCAAAAAGGGAAGCAATTAATTCACATAACTTTGAGAACCAGCTTCTACTTAAGATGAATAAGAACTATAAGTTTTTATAAGTTTGACTGATTCGACCTAAGATTTCTCCCGACTAGTGGCCTGTGAGAGACAGTATCGTCGTTGTCACATCAAATTGTTtgaagtttttgttttgatgtcaGATAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577443.1 True 916 lncRNA 0.41 3 11126383 11127885

Neighbor

gene id symbol gene type direction distance location
fer fer,LOC108411346,LOC107691727 coding upstream 30242 11025868 ~ 11096141 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding upstream 300407 10785557 ~ 10825976 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 748245 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 784879 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 841832 10272650 ~ 10284551 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 91173 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 333818 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 515238 11643123 ~ 11681971 (+)
btf3 btf3,LOC107655933 coding downstream 874389 12002274 ~ 12010222 (+)
arhgef28a arhgef28 coding downstream 898175 12026060 ~ 12118438 (+)
G384973 NA non-coding upstream 9801 11116378 ~ 11116582 (+)
G384906 NA non-coding upstream 28448 11096842 ~ 11097935 (+)
G384887 mcc non-coding upstream 188982 10922884 ~ 10937401 (+)
G384868 NA non-coding upstream 341449 10784701 ~ 10784934 (+)
G384867 NA non-coding upstream 342584 10783404 ~ 10783799 (+)
LOC113531091 NA non-coding downstream 2991 11130876 ~ 11131867 (+)
G384977 NA non-coding downstream 16858 11144743 ~ 11145027 (+)
G384989 NA non-coding downstream 157441 11285326 ~ 11285765 (+)
LOC117596271 NA non-coding downstream 202848 11330733 ~ 11344595 (+)
G385014 NA non-coding downstream 219717 11347602 ~ 11347816 (+)
G384593 NA other upstream 746718 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 1358347 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 2351249 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 2534002 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 2561126 8558826 ~ 8565257 (+)
ajm1 c28h9orf172 other downstream 170089 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 590133 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 1663016 12790901 ~ 12800917 (+)
G386294 NA other downstream 2693903 13821788 ~ 13824055 (+)
G386325 NA other downstream 2697965 13825850 ~ 13828148 (+)

Expression


Co-expression Network