G84227


Basic Information

Item Value
gene id G84227
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17391684 ~ 17391947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU100005
ACGGTGTGGATGAGGGAACTCTCCAGTGATCAGACAGGACTGGCAGTCCCACAGCATATAACAGCTCACCTCTACATTTCCACAGGGAGAGAAATTACTGCACAGTCCTGACAAGCTCCCTGATCGCTGCTCTAAACAATGCCGCTCTCCACCTGCTGCATATCCCCAGCACCTGCTTTACCAACAtcttctctctatctgtctatatcAGAGCAGATTTTGTTGGTGTCTGCAGGTTTCTCTATCAGGAGAATACTGTATTCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100005 True 264 lncRNA 0.48 1 17391684 17391947

Neighbor

gene id symbol gene type direction distance location
ppp1r9ala LOC108266327 coding downstream 141852 17216721 ~ 17249832 (-)
dync1i2a dync1i2 coding downstream 181786 17176681 ~ 17209898 (-)
hat1 hat1,LOC106581768 coding downstream 243009 17129990 ~ 17148675 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding downstream 293702 17095074 ~ 17097982 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 319876 17052057 ~ 17071808 (-)
cir1 cir1 coding upstream 45211 17437158 ~ 17443522 (-)
gpr155a gpr155 coding upstream 57933 17449880 ~ 17464276 (-)
wipf1a LOC108267026 coding upstream 73741 17465688 ~ 17472291 (-)
LOC113547453 chrna1,LOC108266097 coding upstream 81168 17473115 ~ 17482009 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding upstream 94101 17486048 ~ 17523051 (-)
G84189 LOC108266646 non-coding downstream 45334 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 66806 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 79729 17307569 ~ 17311955 (-)
G84061 NA non-coding downstream 263004 17127310 ~ 17128680 (-)
G83953 NA non-coding downstream 425511 16965511 ~ 16966173 (-)
LOC117597450 NA non-coding upstream 15271 17407218 ~ 17431431 (-)
G84394 NA non-coding upstream 334706 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 348690 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 441428 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 739463 18131410 ~ 18131998 (-)
sp3a sp3 other downstream 10512 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 351841 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 985206 16370227 ~ 16406478 (-)
G83554 NA other downstream 1170818 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1315064 16043283 ~ 16076620 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 303343 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1521440 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2051144 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2176802 19568749 ~ 19586103 (-)
G85848 NA other upstream 2834781 20226728 ~ 20237615 (-)

Expression


Co-expression Network