G84394


Basic Information

Item Value
gene id G84394
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17726653 ~ 17727997 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU100224
aaaacattttgatttggAAGCTTATACTGAGTACTccgtccaaaaaaaaaaataataaaaataaaataaaaaaatagcagcAAGAGTATAACCTTTTACTTAAACAACAGAAAAAGCAGCAGTTATCATATAAGTAAATTGTAACCAATGAAGTAGGCTATTTGTAAGAACCATGTAGTGTGTATGGGTCGGGATACTGGTAAAAAACTGACTCATTGATATGTctgatataattttatttactccTCCTTAATTACTGTTAACACCAACCTATTCattcaataaagaaaaaaaaaatcgatatacatctatctatatctatatctaggCTATATCCCTATCTATATCTTAACATTTAAgttcttttctgttttgaaatCATCATGAAGCACTAGTGTGATCATTTCATAACTTTGAGTAGACGAGAAAATCCCTCATAAAATGCATTAccattttgtgctttattttgcGCAGCAGCCTTTTTTCTGAAGTAATTTTCGCAGTATAGATTAGTAAGCACGtggtttgtattttttctgCGCATGCTTCCACAAAAATAACGTTTTTAATCAGCACCCTGCACCCATGTTTTCAAAGAACTATATTGCCCTCTAGCGGTAACCATATCCATTTTAATGCTCTATTCAGTGATGCATTTAACCGCAAAGATACCCTCAAAATatagttaaaatatttatgctatCGGATCTGCCTGCAGCACAACATGCAGGCTTTGAAGTTTTGAATACAGTATTAACACTGTGCCGATCCATGTAATTACTTAGCTAACATTTTAATTGTCTTGTGACTGTATAGATGAATATTTTGATAGGGTTTTTATCTCTCGCTATCACTAAGCAAACACTCGTAAAAACCGATTCCTTAACTTCTAGAAATGCgtagattaattaataaaaacctgaatTTTAGGCAACAGTCAAAGTGAAGTGTTGCAGCCCATGAGTGGAAATGCATTTGGTGAATAAACCTGACTTTCCGTGTGTTTGGGTCGATTTCTTTCAGTCTCACCGACAGACAATTTATCGACCAGACACCCCGTAGAAAAGTGTCTGCATTTTTGGTTGTCAGCAACAGACGCAAACACCCAACTAGAAGGTTTTCAAAGCAGAGTGCAATTACTGTCTTAGACCATAAAGTCATTTAGACCAGACGTCTAGTCTTCTCTATGGCTTTATTGGACCCAGTCTCTTCCTGCTCTAAAGTAATTCTAAAGtaaggtttaaaaataaattgggGTTCTCTACAACACTTATTTCGCAATCAGGAACGGTTTATTAGGCCTACCGATATCCTTTTAgactaaacttttttttgacaTAAGAGC

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU100224 True 1345 lncRNA 0.34 1 17726653 17727997

Neighbor

gene id symbol gene type direction distance location
lnpa lnpk coding downstream 47492 17667566 ~ 17679161 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding downstream 166580 17556819 ~ 17560073 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding downstream 170488 17529937 ~ 17556165 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding downstream 203602 17486048 ~ 17523051 (-)
LOC113547453 chrna1,LOC108266097 coding downstream 244644 17473115 ~ 17482009 (-)
nfe2l2a nfe2l2,LOC107579917 coding upstream 153774 17881771 ~ 17896933 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding upstream 209056 17937053 ~ 17991511 (-)
prkra prkra coding upstream 326791 18054788 ~ 18062269 (-)
casp10 NA coding upstream 340231 18068228 ~ 18076322 (-)
LOC113526302 LOC108266276 coding upstream 354118 18082115 ~ 18084871 (-)
LOC117597450 NA non-coding downstream 295222 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 334706 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 380303 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 401775 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 414698 17307569 ~ 17311955 (-)
LOC117597384 NA non-coding upstream 12640 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 105378 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 403413 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 405405 18133402 ~ 18133689 (-)
G84882 LOC108266575 non-coding upstream 406839 18134836 ~ 18135614 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 26673 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 345481 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 686810 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1320175 16370227 ~ 16406478 (-)
G83554 NA other downstream 1505787 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 1185390 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1715094 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1840752 19568749 ~ 19586103 (-)
G85848 NA other upstream 2498731 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2666474 20394471 ~ 20423244 (-)

Expression


Co-expression Network