G85069


Basic Information

Item Value
gene id G85069
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18667991 ~ 18668211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101041
gATTTTacgagaaaaaaatgaattgaaagtTGTTGCTTTCATACTACATGTAAATCTACTGTATACTGCCATGTCAAATAGGGTTTCTTGTTTACAAACTGCAAACCCCATGGATACACTATGGTATAGGATAGAGTGGCAAGATATATTTGCCAAGAATATAACTGACATGTGAGAATCTAGATGATTGTTTATATGTCGGAAATCAGCatcacttttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101041 True 221 lncRNA 0.33 1 18667991 18668211

Neighbor

gene id symbol gene type direction distance location
csrnp3 csrnp3,LOC107674773,LOC107722915 coding downstream 170582 18468952 ~ 18497409 (-)
slc38a11 slc38a11 coding downstream 288628 18373177 ~ 18379363 (-)
mbnl2 mbnl2 coding downstream 297338 18341416 ~ 18370653 (-)
LOC113526158 rap2a,LOC103043765,LOC100332969,LOC106582448,LOC103391592,LOC105907999,LOC101166017,LOC107549783 coding downstream 330781 18325407 ~ 18337210 (-)
LOC113526154 farp1 coding downstream 354260 18261235 ~ 18313731 (-)
stk39 stk39,LOC107707604,LOC107708317 coding upstream 1840 18670051 ~ 18703548 (-)
spc25 spc25 coding upstream 83703 18751914 ~ 18756220 (-)
cd302 cd302 coding upstream 309976 18978187 ~ 18984693 (-)
LOC113525848 rbms1,LOC108266580,LOC105908026,LOC107730583 coding upstream 323837 18992048 ~ 19044656 (-)
gcgb gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768 coding upstream 475981 19144192 ~ 19145405 (-)
G84975 xirp2 non-coding downstream 112126 18540353 ~ 18555865 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 530908 18135669 ~ 18137083 (-)
G84882 LOC108266575 non-coding downstream 532377 18134836 ~ 18135614 (-)
G84880 ino80d,LOC106582458 non-coding downstream 534302 18133402 ~ 18133689 (-)
G84881 NA non-coding downstream 535993 18131410 ~ 18131998 (-)
G85205 NA non-coding upstream 370016 19038227 ~ 19038432 (-)
G85211 NA non-coding upstream 383187 19051398 ~ 19053050 (-)
G85382 NA non-coding upstream 600451 19268662 ~ 19268952 (-)
G85459 NA non-coding upstream 795941 19464152 ~ 19478394 (-)
G85460 NA non-coding upstream 796564 19464775 ~ 19467176 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 968011 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 1286819 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 1628148 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 2261513 16370227 ~ 16406478 (-)
G83554 NA other downstream 2447125 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 245176 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 774880 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 900538 19568749 ~ 19586103 (-)
G85848 NA other upstream 1558517 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 1726260 20394471 ~ 20423244 (-)

Expression


Co-expression Network