G85211


Basic Information

Item Value
gene id G85211
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19051398 ~ 19053050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101200
CCAACAAAATGTATCATTTCTGGAACAGTCTTCATTGGGCAGTATATTGGTTTAGATTACacttaataaatgtaaacactAACCTGAAGCATGCTTTATTGAATTTAATTGTGCTTTGAGCTCTGAAATCTCTCGCTCTTGGTCTTCTATCTTTTTCTCCAGCTGCTGTGTATACCTTTGAAACTGCtctgtctgaacacacacataagcagacagacagacacacagacagacagacagatcgagCAGACATGGTCCTGATTGACTTTGATTTTGTAGTTATATATATTAGAGTAAGggcagaaagaaaacagaaaaaaatgcactaaTGGCTTGTATTGAACCTTCTCCTGTAGTAGCTTTTTGGCATTTTCATTCTCAATCGAGATGTTGCGGTAGGCTTCGTAGGCTTTGTTCAGCGGATCACCAATGTTTCGGTCCATGCCGCAGCCTTCAGGAACATCACGGACACAGCTGTCATGGGTCCTCGTCCGAAAACTGCCCAAAACACCTACATTTATCTATCGTTTTGAAGTCATGGCGCGCTCTCGGTCCTGCTCTACATCTCAGTGTTCACGTTAAAGGGGCGGAAATGGAGTGTTTCGcacaaatgtacatttttacatgttttacaaCTAGCTGGGAACTTCCCTCGGGGAATCCCCGCGCGCCTGTGACTTCCGCCTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101200 True 690 lncRNA 0.43 2 19051398 19053050

Neighbor

gene id symbol gene type direction distance location
LOC113525848 rbms1,LOC108266580,LOC105908026,LOC107730583 coding downstream 6742 18992048 ~ 19044656 (-)
cd302 cd302 coding downstream 66705 18978187 ~ 18984693 (-)
spc25 spc25 coding downstream 295178 18751914 ~ 18756220 (-)
stk39 stk39,LOC107707604,LOC107708317 coding downstream 347850 18670051 ~ 18703548 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915 coding downstream 553989 18468952 ~ 18497409 (-)
gcgb gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768 coding upstream 91142 19144192 ~ 19145405 (-)
fap LOC108267048,LOC108424318 coding upstream 94065 19147115 ~ 19160623 (-)
ifih1 ifih1 coding upstream 108166 19161216 ~ 19182903 (-)
LOC113526240 kcnh7 coding upstream 131771 19184821 ~ 19249207 (-)
fign fign,LOC107722902 coding upstream 277643 19330693 ~ 19372088 (-)
G85205 NA non-coding downstream 12966 19038227 ~ 19038432 (-)
G85069 NA non-coding downstream 383187 18667991 ~ 18668211 (-)
G84975 xirp2 non-coding downstream 495533 18540353 ~ 18555865 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 914315 18135669 ~ 18137083 (-)
G84882 LOC108266575 non-coding downstream 915784 18134836 ~ 18135614 (-)
G85382 NA non-coding upstream 215612 19268662 ~ 19268952 (-)
G85459 NA non-coding upstream 411102 19464152 ~ 19478394 (-)
G85460 NA non-coding upstream 411725 19464775 ~ 19467176 (-)
G85461 NA non-coding upstream 419956 19473006 ~ 19473321 (-)
G85493 NA non-coding upstream 490561 19543611 ~ 19543850 (-)
LOC113526313 baz2b other downstream 82906 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1351418 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 1670226 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 2011555 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 2644920 16370227 ~ 16406478 (-)
grb14 grb14 other upstream 390041 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 515699 19568749 ~ 19586103 (-)
G85848 NA other upstream 1173678 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 1341421 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 2082996 21136046 ~ 21144621 (-)

Expression


Co-expression Network