G85382


Basic Information

Item Value
gene id G85382
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19268662 ~ 19268952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101381
ggcggttgcgctcgtggggctcgcagatggacctggcggagggaatggagacgggcccgtccctttctccttcctcaccctccaggtccactgtcccctccctgggttcggaagcacgctctgcggtttcttccccccggggagcggactcggcgctccacctatcgtcctccgaggaggtcgatgtggagagcgtcgacccagagccgcagtctcctcaataaggggagctgctcgaggtggttacgcGGGCAGTCGCCAAGCTCaacattgactggcccgctgagacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101381 True 291 lncRNA 0.66 1 19268662 19268952

Neighbor

gene id symbol gene type direction distance location
LOC113526240 kcnh7 coding downstream 19455 19184821 ~ 19249207 (-)
ifih1 ifih1 coding downstream 85759 19161216 ~ 19182903 (-)
fap LOC108267048,LOC108424318 coding downstream 108039 19147115 ~ 19160623 (-)
gcgb gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768 coding downstream 123257 19144192 ~ 19145405 (-)
LOC113525848 rbms1,LOC108266580,LOC105908026,LOC107730583 coding downstream 224006 18992048 ~ 19044656 (-)
fign fign,LOC107722902 coding upstream 61741 19330693 ~ 19372088 (-)
cobll1b cobll1 coding upstream 227854 19496806 ~ 19536404 (-)
tmem37 tmem37 coding upstream 296314 19565266 ~ 19568061 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding upstream 406963 19675915 ~ 19681540 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding upstream 424009 19692961 ~ 19702648 (-)
G85211 NA non-coding downstream 215612 19051398 ~ 19053050 (-)
G85205 NA non-coding downstream 230230 19038227 ~ 19038432 (-)
G85069 NA non-coding downstream 600451 18667991 ~ 18668211 (-)
G84975 xirp2 non-coding downstream 712797 18540353 ~ 18555865 (-)
G84883 LOC108266575,LOC108424342 non-coding downstream 1131579 18135669 ~ 18137083 (-)
G85459 NA non-coding upstream 195200 19464152 ~ 19478394 (-)
G85460 NA non-coding upstream 195823 19464775 ~ 19467176 (-)
G85461 NA non-coding upstream 204054 19473006 ~ 19473321 (-)
G85493 NA non-coding upstream 274659 19543611 ~ 19543850 (-)
G85749 NA non-coding upstream 634978 19903930 ~ 19904289 (-)
LOC113526313 baz2b other downstream 300170 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1568682 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 1887490 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 2228819 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 2862184 16370227 ~ 16406478 (-)
grb14 grb14 other upstream 174139 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 299797 19568749 ~ 19586103 (-)
G85848 NA other upstream 957776 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 1125519 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1867094 21136046 ~ 21144621 (-)

Expression


Co-expression Network