G76057


Basic Information

Item Value
gene id G76057
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2271867 ~ 2274639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90277
TTTGACACAGGAAGGTAAATCCATTAACAAAAGGTATAAGAACTATAATTATGGTTACGCTGTGTTGCATTGGTGATGATTTTTCACTCATTAATATAACAACAGTGACAGAAACAGTGACAGTAAGGATTGTTTTTATAAGCTTTATTACAAAACTTAGGTTTTGTACACTACAGACCAAGTGCACTTGAAATCAGTGAGACAGAAGAAATCAGTGAAGAAAATGTGTCCATGACACAAGAACGCATGTTCATTATATGAACAAAACTTTCCTAAAGAGCACCACACCCTCCAGTAACCTGCATTCAGAACAGACACCAAACAGAAGCACACAGCACAATGACATGTTTCTGTATCttaacattatatttacaatacaaGAACCTTggacatgaataaaaataaatatataccaaatgtaaatgtaactttaacGACTGTAATATAACGTTCAATGACTCTGCGTAGCAAGCTGTCTAAACTAGATCGCCTGTGTTTCCAAGCAGAGCAAATTTCCGGGCTAAAACAGCAACCAAACTGTTTACTTCCGGGATTTGCTACTCTGTTGGTAATTCACtggctaagaaaaaaaaaaaaaaaaaaaagaatttcactgcatGCTATGCAATGTGAACCCTACATGACTTTCAAATACTTTGAATAATTGTACTGCACACACTAGACGACATATTACTTGCAGTCTCGTGTAGTGGTGTATACTATAGATGCGGCATCTATGCAGTGCCTGGGCTGCCTAAGTATGTGCTTAGGCCTGAATCATACTGCTATTAGCACATATCTGCAAGCACGTCAGAGCATCATGCACAGATGCCCACACAGGTGGCAGTCTTAATACTTGCACGCAACATGAGCATGTACACTAGGGGCAGTGTTGCAAACTGAGCCAGAATTTACAAATAAgggacataaaaaaaaacagcaaaaacataTTGGACTTCTATGTTTCACTGtagtaataaaaagaaaacagacattactttgttttgaaatgtgCTGGGGGGGGGGAAAGAAAACTTGCATGAACAATTATAAAGTCAATTCTCACCAAAAGCATTTCTGTAACCTTGCCACTTGTCTGTATTAGATAGCATTAAACCAGTAATGTATTGAAGCACATTAATTTGACTAGTGTTTAAGTGCACAATTTTATCAATCATGGAAAGGCGatgctttagattttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90277 True 1204 lncRNA 0.37 2 2271867 2274639

Neighbor

gene id symbol gene type direction distance location
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding downstream 25247 2234810 ~ 2246620 (-)
LOC113546994 LOC108261078 coding downstream 191454 2069547 ~ 2080413 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding downstream 273794 1988540 ~ 1998073 (-)
ranbp2 LOC108261082,LOC108440489 coding downstream 285828 1950132 ~ 1986039 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding downstream 400374 1858262 ~ 1871493 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding upstream 206955 2481594 ~ 2522385 (-)
il1rl1 NA coding upstream 392217 2666856 ~ 2680900 (-)
LOC113545737 NA coding upstream 429721 2704360 ~ 2712278 (-)
LOC113545730 LOC108266839 coding upstream 439373 2714012 ~ 2732151 (-)
crfb4 LOC108266840 coding upstream 459545 2734184 ~ 2743220 (-)
G76013 NA non-coding downstream 157268 2114190 ~ 2114599 (-)
G75947 NA non-coding downstream 325691 1945973 ~ 1946176 (-)
G75926 NA non-coding downstream 346614 1913131 ~ 1925253 (-)
G75925 NA non-coding downstream 354429 1911196 ~ 1917438 (-)
G75927 NA non-coding downstream 357138 1914017 ~ 1914729 (-)
G76060 NA non-coding upstream 26082 2300721 ~ 2300940 (-)
G76093 NA non-coding upstream 175080 2449719 ~ 2450949 (-)
G76333 NA non-coding upstream 256015 2530654 ~ 2530992 (-)
G76325 mink1,LOC108427066 non-coding upstream 281867 2556506 ~ 2559152 (-)
LOC117597440 NA non-coding upstream 618737 2893376 ~ 2897204 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 207569 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 468222 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 597294 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 597682 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 609258 1662520 ~ 1662609 (-)
ifngr2 NA other upstream 409869 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 526367 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1512317 3786956 ~ 3816059 (-)
G77283 NA other upstream 2565321 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 3056945 5331584 ~ 5339633 (-)

Expression


Co-expression Network