G76325 (mink1,LOC108427066)


Basic Information

Item Value
gene id G76325
gene name mink1,LOC108427066
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2556506 ~ 2559152 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90626
acacattgaaccttgaggtggatgggctacaacagcagaagaccatgatGGGTTCCActtctttcagccaagaacagaaagaagaGGCTGCATTGGGCACAGGTCCACTAATACTGGACAGTTTAAGACTGGagaaacgtagcctggtctgaagaatttcaatttctgctgaggctcacagatggtagggtcagaatttagcACCAACAGCacgaatccatggacccaacctgccttatGTCAACaatccaggctggtggaggtggtgtaacgCTGTGGGGAATgctttcttggcacactttgagCCTATTAacaccaatcaatcattgcttgaatgccacagaccATTTGATTAtcgttgctgaccatgtgcatcactTCATGGctacaatttaccatcttctaatggttacttccagcatgataatgcaccatgtcacaaagcagaagtcatctcaaactggttttctttcagtgttcttcagtggccttcccagtcaccaaaCACCTTAGGGAcatggtagaacaggagattcgcagcatgaaagtgcagctgaaaaatctgcaggaactgtgtgatgcaatcatgtcaacacggaccagaatctcaaagcaatgtttccaacatcttgtggaatccacgCCATCCatgctgttttgagagcaaagggaggccctagcCAGTAtaatatagtgttcctaataaagtgctcagtgagtataaatgtatatttcaatAAACATAACAATTGCTCCTGAGCGGTTATGCCGTGCCCCATGTGCATCTTTGTAAAATAAGCTTGAACTGCAAACCCAAAGAGCCTGGTTTGAGTCCTCTGTAGTTAAGAACAGTGCTCTATCTCCTCCTCAAACAGTTAACCAGGTATTCAAATACACCATGTATACCTCTAATCTGTAAAGGGCTGTACTGTCTCCATACTGACCTGATATAGATATGTGTAACCTCAAATTAAAGCAGATAGCCTGCTTTTTACTTTACTGTcatggttttatttcaaatgcagCATCCAGGACAATCCCAAAAGCTGTCAGTACATAGTTtgtaaatgaatgagtgaataaatgagcACAGTGCACTACCCTgaggatttctctggagatgtaTGCAATCCAGTCTTCCTTCAGCCAGTTTCCTTTAGTGTTCTTCACCAGGTCTGTGATGGAGCCAGCACCACAGAactccatcaccacCCAGAGCTGGTCATCGTGTCCTGGTGGGCTCTTTTTGATGAAAGCTCCATAGTAGGTGGCGATGTTGCGATGGTGAGAATATTTCTTCAGCATATTAATCTCCAACTTgatttcttcctcttc

Function

symbol description
mink1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including MAPK cascade; actin cytoskeleton reorganization; and activation of protein kinase activity. Predicted to be active in cytoplasm. Orthologous to human MINK1 (misshapen like kinase 1).

NR:

description
Mink1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90626 True 1335 lncRNA 0.44 2 2556506 2559152

Neighbor

gene id symbol gene type direction distance location
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding downstream 34121 2481594 ~ 2522385 (-)
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding downstream 309886 2234810 ~ 2246620 (-)
LOC113546994 LOC108261078 coding downstream 476093 2069547 ~ 2080413 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding downstream 558433 1988540 ~ 1998073 (-)
ranbp2 LOC108261082,LOC108440489 coding downstream 570467 1950132 ~ 1986039 (-)
il1rl1 NA coding upstream 107704 2666856 ~ 2680900 (-)
LOC113545737 NA coding upstream 145208 2704360 ~ 2712278 (-)
LOC113545730 LOC108266839 coding upstream 154860 2714012 ~ 2732151 (-)
crfb4 LOC108266840 coding upstream 175032 2734184 ~ 2743220 (-)
LOC113541336 LOC108266841 coding upstream 186184 2745336 ~ 2760206 (-)
G76333 NA non-coding downstream 25514 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 105557 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 255566 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 281867 2271867 ~ 2274639 (-)
G76013 NA non-coding downstream 441907 2114190 ~ 2114599 (-)
LOC117597440 NA non-coding upstream 334224 2893376 ~ 2897204 (-)
G76400 stk17b non-coding upstream 355248 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 376929 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 406114 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 1033666 3592818 ~ 3595411 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 492208 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 752861 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 881933 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 882321 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 893897 1662520 ~ 1662609 (-)
ifngr2 NA other upstream 125356 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 241854 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1227804 3786956 ~ 3816059 (-)
G77283 NA other upstream 2280808 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2772432 5331584 ~ 5339633 (-)

Expression


Co-expression Network