G76852


Basic Information

Item Value
gene id G76852
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4265653 ~ 4270345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU91240
caaacctctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaacactatcagtactctacaaacttctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaaccctatcaaacctctacaaacctctatcaaaccttttcacaccctatcaaacctctacaaacctctacacaccctatcaaacctctacaaacactatcaaacctctacaaaccctatcaaacatctacaaaccctatcaaacctctacacatcctatcaaacctctacaaacactatcaaacctctacacaccctatcaaacatctacaaaccctatcaaacctctacacaccctatcaaaccctatcaaacctctacaaacctctacacaccctatcaaacctctacacaccctatcaaacctctacacaccctatcaaacctctacacaccctatcaaacctctacaaaccccaCAGGCCTCAGTATATAGGAGACTTGATCAAACTGAGTGCGCCACAAGCAGTACTCAATAGATAGGACCCAAGTGCAGCGCAGATAAGGAGTATGAACAGAAACctccaaaaagagaaataaatactCAGGCCAACACACTCTGCACTGGTTATGGAGAAATGCAACTAACTGAAAAAGCACTCTCCTagaatacacaaaataaagatACAGTTGGAGTCATGCTCATGACTTCTAGGTTAGAAAGCAAGCAACCAAGCACAAGGGGAGCTAGGCTTAAGAGGTATGAGGCCTGACACTCAACCTACAGCAAGCCGGAACCAAAAAAACTCAGATGagtgaatgagaatgagaacaAAGCAGAAACTAAAGGCATAAACTTAGGACTGTCAGGGGAGGACCTCTGACTGCTCGGTACAGAGCGCTAACCAGGAAACAAATGTCCCCCCCTTTTCAACAACGTGAGAGGGTGGCTAGGTTGACAAGATGAGACCAAGCTGCCACAGAGGAAAGACTAGAGTACTGCTGTTTTTCAAAATACTGATACCAGCTTAGTCTTGCCCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91240 True 1105 lncRNA 0.43 2 4265653 4270345

Neighbor

gene id symbol gene type direction distance location
cntnap5a LOC108266700,LOC108425961 coding downstream 139160 4003726 ~ 4126493 (-)
gypc NA coding downstream 342379 3892480 ~ 3923274 (-)
parp14rs1 LOC108266413 coding downstream 481260 3770234 ~ 3784393 (-)
dnah7 dnah7 coding downstream 520271 3633992 ~ 3745382 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding downstream 1205416 2968680 ~ 3060237 (-)
sfrp2 NA coding upstream 19727 4290072 ~ 4294136 (-)
LOC113535176 NA coding upstream 62550 4332895 ~ 4333842 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding upstream 143698 4414043 ~ 4469641 (-)
map3k19 map3k19 coding upstream 234946 4505291 ~ 4515439 (-)
mmadhcb mmadhc coding upstream 377875 4648220 ~ 4655253 (-)
G76845 NA non-coding downstream 23129 4242253 ~ 4242524 (-)
G76813 NA non-coding downstream 222457 4042934 ~ 4043196 (-)
G76796 NA non-coding downstream 257858 4007437 ~ 4007795 (-)
G76794 NA non-coding downstream 259745 4005694 ~ 4005908 (-)
G76688 NA non-coding downstream 297576 3967873 ~ 3968077 (-)
G76858 NA non-coding upstream 13208 4283553 ~ 4284394 (-)
G76860 NA non-coding upstream 15278 4285623 ~ 4285823 (-)
G76899 NA non-coding upstream 88399 4358744 ~ 4361429 (-)
G77040 NA non-coding upstream 221578 4491923 ~ 4493719 (-)
G77107 NA non-coding upstream 334960 4605305 ~ 4605679 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 449594 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 1459790 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1511847 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 2201355 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 2462008 1797982 ~ 1803645 (-)
G77283 NA other upstream 569615 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 1061239 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 1968610 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 2052698 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 2258701 6529046 ~ 6615660 (-)

Expression


Co-expression Network