G76899


Basic Information

Item Value
gene id G76899
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4358744 ~ 4361429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU91296
tagaatattggatttcatttcaaatgaatatttttaaagaaaacaaaaattaatgaCACAAATACTAACAGGGCAAGGATATAAACAACAATACTGGTACTGATCCAGCCACTCCAGCAGAGGCCACAGTGAGCACCGTGCAGTTAGTGTTCGTTTATTACCATGTAGGAAGAATAACATTAATGGGTTTGTTTGTTGGTAGTGTTTGATTAggctatctgtgtgtgtctgcatctgCACTGAATCTGTTAGGTCTGTTATTACCTAAACAGTAGACCTACATCATTAGAATCCAGTGACAATGTGTTCAACTTGGCTGCACTGCAATGCTTGGAGCCATTTGTTTACTGTGGCTATGAAACATGATGCGTAATGATATAGCTGATAgattacacagacacacaagccATAGAGCCTACACTTTTCAAACTTTTCCATTCAGTTGGCAGCCCCACCCACTTAAAACCCATTCCCATGTGCCTGCAAGTGGTAAACATTATTGCACAAGCGTTGGCTCCTCCTGCAGTTTTATGCAGACTTCACTGGAAGTTAAACAGCTACATAGTCACCTATCctatttctcattttaatttctcCAGGCTGAGCTCGTTACGATCGATTTATGTTACGGCTTTCGAACATAAACATCAGCACAGTTTTATAAAGCTGCTGTTTCCATTGGGGTCCTTTCATCAAATCGAACTCAAGAAATTAAATACGATACAAGACAACAGTGTCcttttatcaaaataatataaCATGCAGTGAGGAAAggtacagtgtgttatttttgttaaaaatgtttgcaGTCAGTCGATTCAGacacaatatttacattcacTTACTTATGCATTTACATGCGTATATCAAACAattaaatcaaagaaaaaaaaatgctttgggAAAATATCAACTCATCAGTAGCACAAAAAAATATCAAGCATggtatattttcatattacatttgaaaataaaatgaaatggttCATTTGGTGCAAAAATGTatagacataaaaaaaataggtaGTAGAGACATGTCATACTGCTAAATCATCGTTTCTAAACAGTGGTCAGTATGAAGCTTAGTAGAAAAAATGGTTCTTGATAAATGGTATGAAATAGCAATCTGCAAAATTCTATGTACATATGCAAATGATTTTCAATGGGTggacatacatttacataaaatacagtatttggCACATATTTCAAGCAttatatttgtttctttcagTCATTTGAATGTGTAACAAATGTGTGCAGTGTCAAAACAGGGTTTGAAATGCTCTGTACAAACAATTCTAAATCTACAGCAAAATAACaagtatgtaaataatattaatacttaaCATAATGTATGTTTTTGCAGTTTGGCTTTTGGTGGTTGATGGGCATCAACAGTCTTAGAGTAAACATCTTGCATCTTGAATTAGTAAGTGGTATAATATATGAGAAACTGATAGGAATGATGGTAAACACCCATGATTAAAACACAATCAAATCATAGGTTTGATTAAAGCCATGTGAACATTAAGGAGCATATAGTTAAATTAAGTGCAGTGTGAACTTCAAGATGATCTTTATTCGCTTGGAAATAGATCTAATAGACGATCATATGCAGAGGAAACATGCTCATCCGAACTCTTTGTTCAATACACACATTTGAACACATGATGATTGTTCAGTCAGTAGTTTGACCTTACCTATTGTCAGGTTGCCTTTTTCACTGAAACATACATATGAATGCCAAAACGAGTGGCAAAAATATGATACAAGACACAGAGGTtgatatttaggtttgctaGCAAAGCCTGCAAAATAGAGCAtgttaaaatgtaaagctttgaatgagaaaaaaaggaaatggcaGGGAAACTAAACATTCAGtacaaacattttcatcttcagtaagggctttatcctggtcagggttgtgctGGATCCACagcctatctcaggaacactgggcacgtgGCATGGATACACAGGGTATGGGACGGTGGTCCATCACACACCGACAACCATTCACATaccaatatgttttttttttgggagatggAAGAAAACTGtgaacccacatggacatggagaCAActtgcaaaactctgcacagaccaGACAACAACCTGAACTCATGATTGACCCAGGGATCCTGAAGCAGTTGAAAAGGCAACTCAACCCACTGCACCTTTGTGCCGCcccaatacaaaaatatatttataaaatgaatcGCCTACTTGTTACTGCGAGTAAAAGTGGAATTGGTCAGTACTGGCATTACCCGTGATACCAGAAAAGCGCTCTGGGCTGCATTTGATCACAATTTAGACGTTAGATCTTCATATTATCCAGCTGTAATTGTGAGGTTTTGCTCAGGCAGCGGTTCATTACCATCTCCGTaagcatatacactatattaccaaaagtattcggtcaacccatccaaatgatcagaatcaggtgtcctaatcacttggcctggccacaggtgtataaaatcaagc
>TU91297
ATTATTGCACAAGCGTTGGCTCCTCCTGCAGTTTTATGCAGACTTCACTGGAAGTTAAACAGCTACATAGTCACCTATCctatttctcattttaatttctcCAGGCTGAGCTCGTTACGATCGATTTATGTTACGGCTTTCGAACATAAACATCAGCACAGTTTTATAAAGCTGCTGTTTCCATTGGGGTCCTTTCATCAAATCGAACTCAAGAAATTAAATACGATACAAGACAACAGTGTCcttttatcaaaataatataaCATGCAGTGAGGAAAggtacagtgtgttatttttgttaaaaatgtttgcaGTCAGTCGATTCAGacacaatatttacattcacTTACTTATGCATTTACATGCGTATATCAAACAattaaatcaaagaaaaaaaaatgctttgggAAAATATCAACTCATCAGTAGCACAAAAAAATATCAAGCATggtatattttcatattacatttgaaaataaaatgaaatggttCATTTGGTGCAAAAATGTatagacataaaaaaaataggtaGTAGAGACATGTCATACTGCTAAATCATCGTTTCTAAACAGTGGTCAGTATGAAGCTTAGTAGAAAAAATGGTTCTTGATAAATGGTATGAAATAGCAATCTGCAAAATTCTATGTACATATGCAAATGATTTTCAATGGGTggacatacatttacataaaatacagtatttggCACATATTTCAAGCAttatatttgtttctttcagTCATTTGAATGTGTAACAAATGTGTGCAGTGTCAAAACAGGGTTTGAAATGCTCTGTACAAACAATTCTAAATCTACAGCAAAATAACaagtatgtaaataatattaatacttaaCATAATGTATGTTTTTGCAGTTTGGCTTTTGGTGGTTGATGGGCATCAACAGTCTTAGAGTAAACATCTTGCATCTTGAATTAGTAAGTGGTATAATATATGAGAAACTGATAGGAATGATGGTAAACACCCATGATTAAAACACAATCAAATCATAGGTTTGATTAAAGCCATGTGAACATTAAGGAGCATATAGTTAAATTAAGTGCAGTGTGAACTTCAAGATGATCTTTATTCGCTTGGAAATAGATCTAATAGACGATCATATGCAGAGGAAACATGCTCATCCGAACTCTTTGTTCAATACACACATTTGAACACATGATGATTGTTCAGTCAGTAGTTTGACCTTACCTATTGTCAGGTTGCCTTTTTCACTGAAACATACATATGAATGCCAAAACGAGTGGCAAAAATATGATACAAGACACAGAGGTtgatatttaggtttgctaGCAAAGCCTGCAAAATAGAGCAtgttaaaatgtaaagctttgaatgagaaaaaaaggaaatggcaGGGAAACTAAACATTCAGtacaaacattttcatcttcagtaagggctttatcctggtcagggttgtgctGGATCCACagcctatctcaggaacactgggcacgtgGCATGGATACACAGGGTATGGGACGGTGGTCCATCACACACCGACAACCATTCACATaccaatatgttttttttttgggagatggAAGAAAACTGtgaacccacatggacatggagaCAActtgcaaaactctgcacagaccaGACAACAACCTGAACTCATGATTGACCCAGGGATCCTGAAGCAGTTGAAAAGGCAACTCAACCCACTGCACCTTTGTGCCGCcccaatacaaaaatatatttataaaatgaatcGCCTACTTGTTACTGCGAGTAAAAGTGGAATTGGTCAGTACTGGCATTACCCGTGATACCAGAAAAGCGCTCTGGGCTGCATTTGATCACAATTTAGACGTTAGATCTTCATATTATCCAGCTGTAATTGTGAGGTTTTGCTCAGGCAGCGGTTCATTACCATCTCCGTaagcatatacactatattaccaaaagtattcggtcaacccatccaaatgatcagaatcaggtgtcctaatcacttggcctggccacaggtgtataaaatcaagcactgtttttacaaacatttgtgaaagaatgggccgctctcaggagctcagtgaattccagcgtggaactgtcataggatgccacctgtgcaacaaatccagtcgtgaaatttcctcgctcctaaatattccacagtcaactgtcagctttatcataacaaaatggaagagtttgggaacaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91296 True 2504 lncRNA 0.37 1 4358926 4361429
TU91297 False 2191 lncRNA 0.37 1 4358744 4360934

Neighbor

gene id symbol gene type direction distance location
LOC113535176 NA coding downstream 24902 4332895 ~ 4333842 (-)
sfrp2 NA coding downstream 64608 4290072 ~ 4294136 (-)
cntnap5a LOC108266700,LOC108425961 coding downstream 232251 4003726 ~ 4126493 (-)
gypc NA coding downstream 435470 3892480 ~ 3923274 (-)
parp14rs1 LOC108266413 coding downstream 574351 3770234 ~ 3784393 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding upstream 52614 4414043 ~ 4469641 (-)
map3k19 map3k19 coding upstream 143862 4505291 ~ 4515439 (-)
mmadhcb mmadhc coding upstream 286791 4648220 ~ 4655253 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding upstream 407132 4768561 ~ 4777472 (-)
nmi nmi coding upstream 460803 4822232 ~ 4829512 (-)
G76860 NA non-coding downstream 72921 4285623 ~ 4285823 (-)
G76858 NA non-coding downstream 74350 4283553 ~ 4284394 (-)
G76852 NA non-coding downstream 88399 4265653 ~ 4270345 (-)
G76845 NA non-coding downstream 116220 4242253 ~ 4242524 (-)
G76813 NA non-coding downstream 315548 4042934 ~ 4043196 (-)
G77040 NA non-coding upstream 130494 4491923 ~ 4493719 (-)
G77107 NA non-coding upstream 243876 4605305 ~ 4605679 (-)
G77130 NA non-coding upstream 276918 4638347 ~ 4638551 (-)
G77291 NA non-coding upstream 491627 4853056 ~ 4879593 (-)
G77364 NA non-coding upstream 641280 5002709 ~ 5055475 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 542685 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 1552881 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1604938 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 2294446 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 2555099 1797982 ~ 1803645 (-)
G77283 NA other upstream 478531 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 970155 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 1877526 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 1961614 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 2167617 6529046 ~ 6615660 (-)

Expression


Co-expression Network