G79826


Basic Information

Item Value
gene id G79826
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 9568555 ~ 9569120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU94755
aaacatttaaaactattcGAAGTATTTTTTACAGATGCGTTCCGATCGCGCAGACACAATACCTTACATTGCCTCATCTCAGTGGAAGTGTTGAGGTATGTAGAGACGAACCTGATCAGCGAGTTTCAGCACTGCCATATCGCGGTCACCTGAAGCGACTCATCCGATCTGCTGCAGATGAACACTGATGATAAAACCCGCTCTGCTTCTGCACTGATCTGCTTCTGCACTGATCTGCTCGCTGCAGGCACAAAACCGCCGACGCAGAAAGATGCCCCGCTGATGCAGCTCGTCTGCTCGGGCCCCGGGGCTCGATGGCGGCCCTGGCCGGCTGGTGAGTCGCTACCTCCAGCCAGAGAGCGGAGCAGGACCCGGGATCCAGGGGAGGGATGCAGGGATGCTGGAAAAGCTGCAAACTATCCGCATTTGCAGCAGGGCTCAGTCAGATTTTGATTCGGGTGTGTATCCGCTGCACATCTTCCTGTATGTGATATATATTCGGATGCTTtcagaaaacaggaagtcaacgatttc

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU94755 True 534 TUCP 0.53 2 9568555 9569120

Neighbor

gene id symbol gene type direction distance location
coq10b coq10b,LOC107569649,LOC107690612,LOC107731759 coding downstream 22147 9538062 ~ 9546408 (-)
plcl1 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107719808 coding downstream 77439 9433100 ~ 9491116 (-)
rabl3 rabl3,LOC102779363 coding downstream 250390 9314184 ~ 9318165 (-)
ankrd50l LOC108266510,LOC108412971 coding downstream 393946 9160408 ~ 9174609 (-)
nhlh2 nhlh2,LOC108266261,LOC105019883,LOC107576851,LOC103035065,LOC107739819,LOC107719823 coding downstream 481686 9083482 ~ 9086869 (-)
pikfyve pikfyve coding upstream 29119 9598239 ~ 9627430 (-)
itgbl1 itgbl1,LOC107690616,LOC107748609,LOC107731761,LOC107600373,LOC107569583 coding upstream 208548 9777668 ~ 9827559 (-)
si:ch211-168k14.2 si:ch211-168k14.2,LOC108266656,LOC108441415,LOC107681321,LOC107748618,LOC107600399,LOC105905900 coding upstream 343803 9912923 ~ 10074838 (-)
zic2a zic2,LOC106586042 coding upstream 499364 10068484 ~ 10072639 (-)
clybl clybl,LOC107681316,LOC107748615,LOC107600379 coding upstream 528111 10097231 ~ 10164297 (-)
G79799 hspd1,LOC107690611 non-coding downstream 32948 9532009 ~ 9535607 (-)
G79553 NA non-coding downstream 273752 9294603 ~ 9294803 (-)
G79541 olig1 non-coding downstream 311664 9255388 ~ 9256891 (-)
G79529 NA non-coding downstream 354339 9212105 ~ 9214216 (-)
LOC113525875 wap65-1 non-coding downstream 372567 9181667 ~ 9195988 (-)
G79864 NA non-coding upstream 107788 9676908 ~ 9677126 (-)
G79908 NA non-coding upstream 176089 9745209 ~ 9745434 (-)
G79920 NA non-coding upstream 186621 9755741 ~ 9755965 (-)
G79923 NA non-coding upstream 188810 9757930 ~ 9758169 (-)
LOC113525888 NA non-coding upstream 195365 9764485 ~ 9766576 (-)
LOC113525856 mob4,hspe1,LOC108266284,LOC106582314,LOC106586370,LOC105016277,LOC101078365,LOC101472107,LOC104932517,LOC103156730,LOC106530744,LOC100701317,LOC102310674,LOC103391647,LOC108238849,LOC107690609,LOC107731766 other downstream 36884 9520729 ~ 9531671 (-)
cnga4 cnga4 other downstream 419908 9099536 ~ 9148647 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other downstream 549107 8996783 ~ 9019448 (-)
LOC117597331 NA other downstream 691319 8857819 ~ 8877236 (-)
G79349 NA other downstream 796126 8771466 ~ 8772429 (-)
si:dkey-83m22.7 NA other upstream 63565 9632685 ~ 9654455 (-)
LOC113526229 nxpe3 other upstream 1026320 10595440 ~ 10614287 (-)
G80600 NA other upstream 1400297 10969417 ~ 10971157 (-)
G80656 man1a2,LOC107099294,LOC107395482,LOC101162964 other upstream 1449159 11018279 ~ 11035561 (-)
LOC113546407 NA other upstream 1728748 11297868 ~ 11302844 (-)

Expression


Co-expression Network